Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 MTND1P7-201ENST00000632801 297 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 AC008568.2-201ENST00000623862 2313 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SOX4Q06945 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SOX4Q06945 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.13□□□□□ -1.75
SOX4Q06945 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SOX4Q06945 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.13□□□□□ -1.75
SOX4Q06945 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
SOX4Q06945 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
SOX4Q06945 RNA5SP197-201ENST00000363357 119 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 RNU6-1130P-201ENST00000365434 107 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
SOX4Q06945 SNORD116-18-201ENST00000383961 92 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 RNU6-1181P-201ENST00000384191 106 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 RNU6-140P-201ENST00000384566 108 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 RNU6-959P-201ENST00000384671 107 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 MIR670-201ENST00000390142 98 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
SOX4Q06945 Y_RNA.580-201ENST00000391004 95 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 RNU5E-9P-201ENST00000411164 104 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.12□□□□□ -1.75
SOX4Q06945 FTH1P6-201ENST00000430768 320 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 RPL23AP14-201ENST00000468281 468 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC4.12□□□□□ -1.75
SOX4Q06945 RNU6-1198P-201ENST00000516904 67 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC4.12□□□□□ -1.75
SOX4Q06945 AC020895.1-201ENST00000595362 272 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 AL356157.2-201ENST00000605122 111 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 AL138963.2-201ENST00000605137 226 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.12□□□□□ -1.75
SOX4Q06945 AL133412.1-201ENST00000380194 2992 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 AC118273.1-201ENST00000525324 3006 ntBASIC4.12□□□□□ -1.75
SOX4Q06945 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
SOX4Q06945 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC4.11□□□□□ -1.75
SOX4Q06945 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
SOX4Q06945 SNORA71.3-201ENST00000362582 128 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 Y_RNA.272-201ENST00000364696 102 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 Y_RNA.343-201ENST00000365354 112 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 Y_RNA.497-201ENST00000384447 98 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 SNORD116-20-201ENST00000384529 92 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 RNU6-658P-201ENST00000384606 106 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.11□□□□□ -1.75
SOX4Q06945 AC092047.1-201ENST00000424997 240 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.11□□□□□ -1.75
SOX4Q06945 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.11□□□□□ -1.75
SOX4Q06945 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC4.11□□□□□ -1.75
SOX4Q06945 RAC1P2-201ENST00000511164 579 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 RNU6-479P-201ENST00000516348 105 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 RNU1-95P-201ENST00000516357 160 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 RNU1-128P-201ENST00000516704 160 ntBASIC4.11□□□□□ -1.75
SOX4Q06945 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC4.11□□□□□ -1.75
SOX4Q06945 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.11□□□□□ -1.75
SOX4Q06945 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.11□□□□□ -1.75
SOX4Q06945 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SOX4Q06945 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
SOX4Q06945 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SOX4Q06945 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SOX4Q06945 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
SOX4Q06945 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX4Q06945 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.1□□□□□ -1.75
SOX4Q06945 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
SOX4Q06945 ZNF204P-201ENST00000416749 2397 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.1□□□□□ -1.75
SOX4Q06945 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX4Q06945 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SOX4Q06945 SNORD56.1-201ENST00000362913 68 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 RNU4-56P-201ENST00000364700 142 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 RNU1-140P-201ENST00000365040 165 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 MIR325-201ENST00000385260 98 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 RN7SKP177-201ENST00000410567 355 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 RNU6-735P-201ENST00000410612 107 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 SNORA71B-202ENST00000439232 272 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX4Q06945 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX4Q06945 RNA5SP208-201ENST00000516156 78 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 RNU1-103P-201ENST00000516502 125 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX4Q06945 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.1□□□□□ -1.75
SOX4Q06945 AC022441.3-201ENST00000605737 136 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 RNU1-30P-201ENST00000606575 163 ntBASIC4.1□□□□□ -1.75
SOX4Q06945 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX4Q06945 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC4.1□□□□□ -1.75
SOX4Q06945 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.1□□□□□ -1.75
SOX4Q06945 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.1□□□□□ -1.75
SOX4Q06945 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX4Q06945 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX4Q06945 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SOX4Q06945 FTLP6-201ENST00000355274 422 ntBASIC4.09□□□□□ -1.75
SOX4Q06945 MIR448-201ENST00000362131 111 ntBASIC4.09□□□□□ -1.75
SOX4Q06945 SNORA5A-201ENST00000384111 134 ntBASIC4.09□□□□□ -1.75
SOX4Q06945 U3.19-201ENST00000390893 196 ntBASIC4.09□□□□□ -1.75
SOX4Q06945 RNU6-1154P-201ENST00000391001 104 ntBASIC4.09□□□□□ -1.75
SOX4Q06945 RPL21P17-201ENST00000397467 475 ntBASIC4.09□□□□□ -1.75
SOX4Q06945 AL357139.1-201ENST00000407792 426 ntBASIC4.09□□□□□ -1.75
SOX4Q06945 AL358075.3-201ENST00000426289 226 ntBASIC4.09□□□□□ -1.75
SOX4Q06945 AL512844.2-201ENST00000433990 593 ntBASIC4.09□□□□□ -1.75
SOX4Q06945 AC010095.1-201ENST00000443543 144 ntBASIC4.09□□□□□ -1.75
SOX4Q06945 MTATP6P7-201ENST00000453315 681 ntBASIC4.09□□□□□ -1.75
SOX4Q06945 SNRPGP7-201ENST00000469016 106 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms