Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.09□□□□□ -2.39
CUX1P39880 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC0.09□□□□□ -2.39
CUX1P39880 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.09□□□□□ -2.39
CUX1P39880 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.09□□□□□ -2.39
CUX1P39880 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC0.09□□□□□ -2.39
CUX1P39880 RNU6-91P-201ENST00000607774 107 ntBASIC0.09□□□□□ -2.39
CUX1P39880 AP001596.2-201ENST00000608410 312 ntBASIC0.09□□□□□ -2.39
CUX1P39880 AC104820.1-201ENST00000624183 307 ntBASIC0.09□□□□□ -2.39
CUX1P39880 MIR4275-201ENST00000636486 87 ntBASIC0.09□□□□□ -2.39
CUX1P39880 AL590396.4-201ENST00000636779 956 ntBASIC0.09□□□□□ -2.39
CUX1P39880 Y_RNA.124-201ENST00000363339 93 ntBASIC0.08□□□□□ -2.4
CUX1P39880 RNU6-945P-201ENST00000383947 107 ntBASIC0.08□□□□□ -2.4
CUX1P39880 RNU6-48P-201ENST00000384161 107 ntBASIC0.08□□□□□ -2.4
CUX1P39880 Y_RNA.572-201ENST00000384757 98 ntBASIC0.08□□□□□ -2.4
CUX1P39880 RNU6-1237P-201ENST00000384777 107 ntBASIC0.08□□□□□ -2.4
CUX1P39880 MIR942-201ENST00000401111 86 ntBASIC0.08□□□□□ -2.4
CUX1P39880 MIR1295A-201ENST00000408463 79 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.08□□□□□ -2.4
CUX1P39880 RPL26P27-201ENST00000414397 437 ntBASIC0.08□□□□□ -2.4
CUX1P39880 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.08□□□□□ -2.4
CUX1P39880 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.08□□□□□ -2.4
CUX1P39880 MTCO3P18-201ENST00000440206 761 ntBASIC0.08□□□□□ -2.4
CUX1P39880 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
CUX1P39880 AC105758.1-201ENST00000506038 399 ntBASIC0.08□□□□□ -2.4
CUX1P39880 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.08□□□□□ -2.4
CUX1P39880 MTCO3P7-201ENST00000510008 774 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AP003392.2-201ENST00000527269 208 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AL121579.1-201ENST00000555129 305 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AC015688.6-201ENST00000577737 104 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.08□□□□□ -2.4
CUX1P39880 AC091057.3-201ENST00000602684 733 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.08□□□□□ -2.4
CUX1P39880 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
CUX1P39880 RNU6-349P-201ENST00000362402 107 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AC063976.4-201ENST00000421971 163 ntBASIC0.08□□□□□ -2.4
CUX1P39880 FAM204CP-201ENST00000424489 642 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AC104651.1-201ENST00000427559 735 ntBASIC0.08□□□□□ -2.4
CUX1P39880 RPL37P21-201ENST00000435890 276 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.08□□□□□ -2.4
CUX1P39880 snoU13.11-201ENST00000459219 104 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AKIRIN2P1-201ENST00000505898 352 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC0.08□□□□□ -2.4
CUX1P39880 uc_338.15-201ENST00000615470 191 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AC130454.1-201ENST00000622948 401 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AC138627.2-201ENST00000624202 601 ntBASIC0.08□□□□□ -2.4
CUX1P39880 AL159972.1-201ENST00000625150 448 ntBASIC0.08□□□□□ -2.4
CUX1P39880 RNU6-743P-201ENST00000364151 106 ntBASIC0.07□□□□□ -2.4
CUX1P39880 MIR194-1-201ENST00000384892 85 ntBASIC0.07□□□□□ -2.4
CUX1P39880 ELOCP14-201ENST00000428070 331 ntBASIC0.07□□□□□ -2.4
CUX1P39880 ELOCP7-201ENST00000439968 331 ntBASIC0.07□□□□□ -2.4
CUX1P39880 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.07□□□□□ -2.4
CUX1P39880 RNA5SP255-201ENST00000516370 107 ntBASIC0.07□□□□□ -2.4
CUX1P39880 RNU6-703P-201ENST00000516946 107 ntBASIC0.07□□□□□ -2.4
CUX1P39880 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.07□□□□□ -2.4
CUX1P39880 MTCO2P15-201ENST00000532655 656 ntBASIC0.07□□□□□ -2.4
CUX1P39880 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC0.07□□□□□ -2.4
CUX1P39880 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC0.07□□□□□ -2.4
CUX1P39880 U3.9-201ENST00000363823 204 ntBASIC0.06□□□□□ -2.4
CUX1P39880 SNORD114-6-201ENST00000364393 72 ntBASIC0.06□□□□□ -2.4
CUX1P39880 RNU6-910P-201ENST00000390844 107 ntBASIC0.06□□□□□ -2.4
CUX1P39880 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.06□□□□□ -2.4
CUX1P39880 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.06□□□□□ -2.4
CUX1P39880 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.06□□□□□ -2.4
CUX1P39880 AC113410.1-201ENST00000505029 247 ntBASIC0.06□□□□□ -2.4
CUX1P39880 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC0.06□□□□□ -2.4
CUX1P39880 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.06□□□□□ -2.4
CUX1P39880 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.06□□□□□ -2.4
CUX1P39880 MIR3169-201ENST00000578032 83 ntBASIC0.06□□□□□ -2.4
CUX1P39880 MIR5094-201ENST00000578766 85 ntBASIC0.06□□□□□ -2.4
CUX1P39880 AL357094.1-201ENST00000603845 844 ntBASIC0.06□□□□□ -2.4
CUX1P39880 AL353765.1-201ENST00000605514 183 ntBASIC0.06□□□□□ -2.4
CUX1P39880 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.06□□□□□ -2.4
CUX1P39880 MIR371B-201ENST00000638082 66 ntBASIC0.06□□□□□ -2.4
CUX1P39880 Y_RNA.99-201ENST00000363138 105 ntBASIC0.05□□□□□ -2.4
CUX1P39880 RNU6-878P-201ENST00000384578 110 ntBASIC0.05□□□□□ -2.4
CUX1P39880 RNU6-1054P-201ENST00000411293 104 ntBASIC0.05□□□□□ -2.4
CUX1P39880 RPS29P8-201ENST00000445109 171 ntBASIC0.05□□□□□ -2.4
CUX1P39880 AC084024.2-201ENST00000503480 791 ntBASIC0.05□□□□□ -2.4
CUX1P39880 AC093259.1-201ENST00000509755 300 ntBASIC0.05□□□□□ -2.4
CUX1P39880 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.05□□□□□ -2.4
CUX1P39880 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC0.05□□□□□ -2.4
CUX1P39880 HMGB1P33-201ENST00000563485 527 ntBASIC0.05□□□□□ -2.4
CUX1P39880 AC005951.2-201ENST00000576282 495 ntBASIC0.05□□□□□ -2.4
CUX1P39880 AC034229.4-201ENST00000607861 441 ntBASIC0.05□□□□□ -2.4
CUX1P39880 AC093648.1-201ENST00000623546 606 ntBASIC0.05□□□□□ -2.4
CUX1P39880 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC0.05□□□□□ -2.4
CUX1P39880 ENSAP3-201ENST00000312710 333 ntBASIC0.04□□□□□ -2.4
CUX1P39880 RNU6-160P-201ENST00000384591 107 ntBASIC0.04□□□□□ -2.4
CUX1P39880 AL592310.1-201ENST00000414330 671 ntBASIC0.04□□□□□ -2.4
CUX1P39880 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC0.04□□□□□ -2.4
CUX1P39880 AC092001.1-201ENST00000453012 261 ntBASIC0.04□□□□□ -2.4
CUX1P39880 CECR9-201ENST00000453421 199 ntBASIC0.04□□□□□ -2.4
CUX1P39880 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC0.04□□□□□ -2.4
CUX1P39880 MTCYBP40-201ENST00000509390 1135 ntBASIC0.04□□□□□ -2.4
CUX1P39880 RNA5SP67-201ENST00000516422 131 ntBASIC0.04□□□□□ -2.4
CUX1P39880 RNU6-965P-201ENST00000516721 96 ntBASIC0.04□□□□□ -2.4
CUX1P39880 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC0.04□□□□□ -2.4
CUX1P39880 AC079610.2-201ENST00000604818 690 ntBASIC0.04□□□□□ -2.4
CUX1P39880 PCMTD1P7-201ENST00000634506 357 ntBASIC0.04□□□□□ -2.4
CUX1P39880 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms