Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CALM2P3-201ENST00000400429 449 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 BX664727.1-201ENST00000416024 466 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 FABP5P4-201ENST00000437203 171 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 RPS15AP9-201ENST00000439856 381 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 TRBVB-201ENST00000477100 408 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 SNORA3.4-201ENST00000515969 96 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 RNA5SP481-201ENST00000516814 122 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC-0.21□□□□□ -2.44
HMGA1P17096 AC022861.1-201ENST00000522981 663 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 ZNF705CP-201ENST00000530515 889 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC-0.21□□□□□ -2.44
HMGA1P17096 AC098483.2-201ENST00000603158 454 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 AC105148.1-201ENST00000604961 409 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 AC004805.2-201ENST00000605382 482 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 AL157786.1-207ENST00000627771 695 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 ANKRD36BP1-202ENST00000604892 1417 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 MIR520A-201ENST00000384862 85 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC-0.22□□□□□ -2.44
HMGA1P17096 RPL37P21-201ENST00000435890 276 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 SNRPEP9-201ENST00000436794 238 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC-0.22□□□□□ -2.44
HMGA1P17096 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC-0.22□□□□□ -2.44
HMGA1P17096 AC025459.1-201ENST00000504072 156 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 AC093534.1-201ENST00000504977 132 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 AC010587.2-201ENST00000511727 448 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 SNORD79.1-201ENST00000516069 84 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 RNA5SP227-201ENST00000516184 113 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 AC104417.1-201ENST00000523974 751 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 AL356057.1-201ENST00000533798 831 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 AC141557.1-201ENST00000540982 400 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC-0.22□□□□□ -2.44
HMGA1P17096 EIF1P4-201ENST00000572664 335 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 U2.21-201ENST00000637295 81 ntBASIC-0.22□□□□□ -2.44
HMGA1P17096 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC-0.22□□□□□ -2.45
HMGA1P17096 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.22□□□□□ -2.45
HMGA1P17096 AL079343.1-201ENST00000572358 1771 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 Y_RNA.363-201ENST00000365529 113 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 RNU6-152P-201ENST00000384037 107 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 RNU6-514P-201ENST00000384208 107 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 ZNF92P1Y-201ENST00000415010 1191 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC-0.23□□□□□ -2.45
HMGA1P17096 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC-0.23□□□□□ -2.45
HMGA1P17096 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC-0.23□□□□□ -2.45
HMGA1P17096 AC093259.1-201ENST00000509755 300 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 MTCYBP43-201ENST00000513621 740 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC-0.23□□□□□ -2.45
HMGA1P17096 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC-0.23□□□□□ -2.45
HMGA1P17096 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC-0.23□□□□□ -2.45
HMGA1P17096 AC098614.4-201ENST00000607601 462 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 uc_338.34-201ENST00000617467 174 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 AC013470.4-201ENST00000619978 986 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 AC097372.5-201ENST00000623665 376 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC-0.23□□□□□ -2.45
HMGA1P17096 ZNF849P-201ENST00000594711 1566 ntBASIC-0.23□□□□□ -2.45
HMGA1P17096 MTND5P16-201ENST00000460269 1703 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 SNORD114-5-201ENST00000362928 70 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 SNORD114-6-201ENST00000364393 72 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 RNU6-658P-201ENST00000384606 106 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 RNU6-950P-201ENST00000384651 107 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 Y_RNA.551-201ENST00000384661 102 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 CCNG1P1-201ENST00000406783 885 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 CCDC58P2-201ENST00000417131 366 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 PDCL2P1-201ENST00000419302 352 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC-0.24□□□□□ -2.45
HMGA1P17096 HMGN1P33-201ENST00000432945 451 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 AC245047.7-201ENST00000440265 293 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC-0.24□□□□□ -2.45
HMGA1P17096 AC079776.3-201ENST00000450665 370 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC-0.24□□□□□ -2.45
HMGA1P17096 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC-0.24□□□□□ -2.45
HMGA1P17096 BPTFP1-201ENST00000579209 492 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 AC239868.4-201ENST00000608318 671 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 AC104820.1-201ENST00000624183 307 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 AL590396.4-201ENST00000636779 956 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 AC017104.5-201ENST00000637647 639 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 AL159152.1-201ENST00000635019 2587 ntBASIC-0.24□□□□□ -2.45
HMGA1P17096 RNU4-48P-201ENST00000365559 182 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC-0.25□□□□□ -2.45
HMGA1P17096 AF228730.1-201ENST00000397972 663 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 AC008267.5-201ENST00000424928 265 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC-0.25□□□□□ -2.45
HMGA1P17096 AL606489.2-201ENST00000433886 234 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 BRK1P2-201ENST00000442875 223 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 RPL30P6-201ENST00000475925 342 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 HMGN1P12-201ENST00000499125 195 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 IL7-206ENST00000520269 456 ntTSL 3 BASIC-0.25□□□□□ -2.45
HMGA1P17096 AC036111.3-201ENST00000526389 112 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 SNORD39.3-201ENST00000584451 71 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 AC002545.1-201ENST00000592511 181 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 AL451064.1-201ENST00000607718 471 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 AL133445.2-201ENST00000611191 527 ntBASIC-0.25□□□□□ -2.45
HMGA1P17096 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC-0.25□□□□□ -2.45
HMGA1P17096 SNRPEP3-201ENST00000338402 276 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 U8.7-201ENST00000364940 136 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AL355796.1-201ENST00000406706 323 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.26□□□□□ -2.45
HMGA1P17096 RAC1P8-201ENST00000427086 527 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 RAB28P5-201ENST00000427490 651 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 HMGN2P34-201ENST00000437647 269 ntBASIC-0.26□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms