Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 NDUFB1P1-201ENST00000435191 180 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 AC006445.1-201ENST00000491925 405 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.85□□□□□ -1.79
COL6A1P12109 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.85□□□□□ -1.79
COL6A1P12109 AC084851.1-201ENST00000529105 249 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.85□□□□□ -1.79
COL6A1P12109 RPL12P50-201ENST00000603116 116 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 AL390123.1-201ENST00000603216 237 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.85□□□□□ -1.79
COL6A1P12109 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.85□□□□□ -1.79
COL6A1P12109 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A1P12109 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A1P12109 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.85□□□□□ -1.79
COL6A1P12109 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A1P12109 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A1P12109 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A1P12109 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
COL6A1P12109 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
COL6A1P12109 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-37P-201ENST00000362692 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 Y_RNA.214-201ENST00000364201 112 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-11P-201ENST00000364234 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-7-201ENST00000364784 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-8-201ENST00000365467 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-25P-201ENST00000383873 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-1-201ENST00000383898 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-48P-201ENST00000384161 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-36P-201ENST00000384172 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-4P-201ENST00000384205 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-5P-201ENST00000384238 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-3P-201ENST00000384314 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-16P-201ENST00000384385 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-1026P-201ENST00000384465 108 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-15P-201ENST00000384534 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 SNORA44-201ENST00000384584 132 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 Y_RNA.533-201ENST00000384596 114 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-2-201ENST00000384627 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-29P-201ENST00000384637 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-9-201ENST00000384776 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-33P-201ENST00000384793 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 MIR521-1-201ENST00000384902 87 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
COL6A1P12109 ARL5AP4-201ENST00000430731 512 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 AC107083.1-201ENST00000439643 279 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 SNORD127-201ENST00000458892 86 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RPS20P22-201ENST00000473700 357 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-911P-201ENST00000516523 104 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-1282P-201ENST00000516735 96 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.84□□□□□ -1.79
COL6A1P12109 MIR4276-201ENST00000584832 70 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.84□□□□□ -1.79
COL6A1P12109 AC009314.1-201ENST00000603871 304 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 RNU6-6P-201ENST00000606623 107 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 MIR1244-1-201ENST00000612829 85 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.84□□□□□ -1.79
COL6A1P12109 MIR1244-3-201ENST00000635744 85 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 MIR1244-2-201ENST00000636449 85 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 MIR1244-4-202ENST00000636813 85 ntBASIC3.84□□□□□ -1.79
COL6A1P12109 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.84□□□□□ -1.79
COL6A1P12109 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL6A1P12109 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.84□□□□□ -1.8
COL6A1P12109 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.84□□□□□ -1.8
COL6A1P12109 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
COL6A1P12109 NCAPGP1-201ENST00000505112 1814 ntBASIC3.84□□□□□ -1.8
COL6A1P12109 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A1P12109 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A1P12109 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A1P12109 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A1P12109 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.83□□□□□ -1.8
COL6A1P12109 MIR422A-201ENST00000362286 90 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 RNU6-770P-201ENST00000363929 105 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 Y_RNA.222-201ENST00000364264 102 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 RNU6-741P-201ENST00000383889 107 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 SNORA69.1-201ENST00000390904 137 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 ELOCP20-201ENST00000422460 345 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 AC007919.1-201ENST00000429380 217 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 NDUFB1P2-201ENST00000449477 176 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 AC010099.1-201ENST00000455434 375 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 snoU13.28-201ENST00000459235 104 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 AL160314.1-201ENST00000490836 438 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.83□□□□□ -1.8
COL6A1P12109 FCF1P8-201ENST00000510322 597 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.83□□□□□ -1.8
COL6A1P12109 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.83□□□□□ -1.8
COL6A1P12109 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.83□□□□□ -1.8
COL6A1P12109 AL158827.2-201ENST00000602494 330 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 AL109918.3-201ENST00000603072 338 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 RAC1P9-201ENST00000604990 392 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.83□□□□□ -1.8
COL6A1P12109 AC093732.2-201ENST00000607950 274 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 MIR8076-201ENST00000611401 83 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 AC090132.2-201ENST00000615881 347 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 AC141273.2-201ENST00000618989 130 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 AL159153.1-201ENST00000619688 317 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 AC130454.1-201ENST00000622948 401 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 AL691447.3-201ENST00000635020 330 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 263.5 ms