Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RPL21P99-201ENST00000480369 423 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.29□□□□□ -1.88
HMGB1P09429 MIR449C-201ENST00000516047 92 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 HSPE1P18-201ENST00000517602 280 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.29□□□□□ -1.88
HMGB1P09429 AL118558.2-201ENST00000556294 238 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 AC027807.1-201ENST00000559921 996 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.29□□□□□ -1.88
HMGB1P09429 AL359880.1-201ENST00000621879 266 ntBASIC3.29□□□□□ -1.88
HMGB1P09429 SNORD32A-201ENST00000364805 84 ntBASIC3.28□□□□□ -1.88
HMGB1P09429 Y_RNA.504-201ENST00000384481 104 ntBASIC3.28□□□□□ -1.88
HMGB1P09429 MIR1262-201ENST00000408276 93 ntBASIC3.28□□□□□ -1.88
HMGB1P09429 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.28□□□□□ -1.88
HMGB1P09429 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGB1P09429 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HMGB1P09429 AP000705.1-201ENST00000454567 350 ntBASIC3.28□□□□□ -1.88
HMGB1P09429 AC011825.1-201ENST00000484967 388 ntBASIC3.28□□□□□ -1.88
HMGB1P09429 PTP4A1P4-201ENST00000512479 322 ntBASIC3.28□□□□□ -1.88
HMGB1P09429 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGB1P09429 AL121757.2-201ENST00000611223 313 ntBASIC3.28□□□□□ -1.88
HMGB1P09429 MIR1248-201ENST00000629190 106 ntBASIC3.28□□□□□ -1.88
HMGB1P09429 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.28□□□□□ -1.88
HMGB1P09429 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.28□□□□□ -1.88
HMGB1P09429 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.27□□□□□ -1.89
HMGB1P09429 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
HMGB1P09429 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.27□□□□□ -1.89
HMGB1P09429 SNORA70.4-201ENST00000365509 134 ntBASIC3.27□□□□□ -1.89
HMGB1P09429 RNU6-142P-201ENST00000384019 107 ntBASIC3.27□□□□□ -1.89
HMGB1P09429 AC006946.1-201ENST00000429106 328 ntBASIC3.27□□□□□ -1.89
HMGB1P09429 RPL39P5-202ENST00000512505 151 ntBASIC3.27□□□□□ -1.89
HMGB1P09429 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.27□□□□□ -1.89
HMGB1P09429 RNU6-991P-201ENST00000516168 107 ntBASIC3.27□□□□□ -1.89
HMGB1P09429 AC025423.5-201ENST00000550230 219 ntBASIC3.27□□□□□ -1.89
HMGB1P09429 AC245505.1-201ENST00000556398 224 ntBASIC3.27□□□□□ -1.89
HMGB1P09429 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.27□□□□□ -1.89
HMGB1P09429 AC009314.1-201ENST00000603871 304 ntBASIC3.27□□□□□ -1.89
HMGB1P09429 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.27□□□□□ -1.89
HMGB1P09429 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HMGB1P09429 AP000560.1-201ENST00000624150 1937 ntBASIC3.27□□□□□ -1.89
HMGB1P09429 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.26□□□□□ -1.89
HMGB1P09429 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 ZNF702P-202ENST00000434269 1966 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 RNU6-82P-201ENST00000363970 107 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 RNU4-20P-201ENST00000365601 151 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 MIR17-201ENST00000385012 84 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 AC016907.1-201ENST00000419483 435 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 ARL5AP4-201ENST00000430731 512 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 MTND3P16-201ENST00000452205 344 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 AC016632.1-201ENST00000503994 196 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.26□□□□□ -1.89
HMGB1P09429 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.26□□□□□ -1.89
HMGB1P09429 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.26□□□□□ -1.89
HMGB1P09429 AP001836.1-201ENST00000604675 523 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 AC103705.1-201ENST00000619013 241 ntBASIC3.26□□□□□ -1.89
HMGB1P09429 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC3.26□□□□□ -1.89
HMGB1P09429 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
HMGB1P09429 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.25□□□□□ -1.89
HMGB1P09429 RNU4-75P-201ENST00000364621 146 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 SNORD14D-201ENST00000384390 87 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 Y_RNA.517-201ENST00000384551 106 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 AL445529.1-201ENST00000398713 389 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 AL356057.3-201ENST00000402607 340 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.25□□□□□ -1.89
HMGB1P09429 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.25□□□□□ -1.89
HMGB1P09429 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC3.25□□□□□ -1.89
HMGB1P09429 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.25□□□□□ -1.89
HMGB1P09429 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.25□□□□□ -1.89
HMGB1P09429 AC078809.1-201ENST00000427601 140 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 DLGAP5P1-201ENST00000430307 464 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 DNAJC19P4-201ENST00000440115 345 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 MTCO2P3-201ENST00000442543 421 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 GPM6BP3-201ENST00000442797 145 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.25□□□□□ -1.89
HMGB1P09429 AC091874.1-201ENST00000511402 339 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 Y_RNA.693-201ENST00000516641 110 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 RNU6-835P-201ENST00000516974 104 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 AC087854.1-201ENST00000519706 414 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 AP005660.1-201ENST00000522972 293 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.25□□□□□ -1.89
HMGB1P09429 AC104576.1-201ENST00000524225 88 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HMGB1P09429 AL356157.2-201ENST00000605122 111 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 AP000654.2-201ENST00000605633 586 ntBASIC3.25□□□□□ -1.89
HMGB1P09429 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
HMGB1P09429 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC3.25□□□□□ -1.89
HMGB1P09429 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
HMGB1P09429 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HMGB1P09429 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.24□□□□□ -1.89
HMGB1P09429 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
HMGB1P09429 MIR29C-201ENST00000385231 88 ntBASIC3.24□□□□□ -1.89
HMGB1P09429 SNORA46.1-201ENST00000391069 153 ntBASIC3.24□□□□□ -1.89
HMGB1P09429 RN7SKP61-201ENST00000410642 295 ntBASIC3.24□□□□□ -1.89
HMGB1P09429 RNA5SP450-201ENST00000411206 102 ntBASIC3.24□□□□□ -1.89
HMGB1P09429 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.24□□□□□ -1.89
HMGB1P09429 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.24□□□□□ -1.89
HMGB1P09429 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.24□□□□□ -1.89
HMGB1P09429 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.24□□□□□ -1.89
HMGB1P09429 SNORA19.2-201ENST00000516013 114 ntBASIC3.24□□□□□ -1.89
HMGB1P09429 Y_RNA.704-201ENST00000516851 102 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms