Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 MTCO2P31-201ENST00000402702 684 ntBASIC0.23□□□□□ -2.37
TNFP01375 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC0.23□□□□□ -2.37
TNFP01375 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.23□□□□□ -2.37
TNFP01375 AC026410.2-201ENST00000460281 156 ntBASIC0.23□□□□□ -2.37
TNFP01375 AC097473.1-201ENST00000508142 408 ntBASIC0.23□□□□□ -2.37
TNFP01375 RNA5SP330-201ENST00000517096 96 ntBASIC0.23□□□□□ -2.37
TNFP01375 RNU6-165P-201ENST00000517170 99 ntBASIC0.23□□□□□ -2.37
TNFP01375 RNA5SP437-201ENST00000517249 129 ntBASIC0.23□□□□□ -2.37
TNFP01375 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC0.23□□□□□ -2.37
TNFP01375 AC006518.2-201ENST00000542513 940 ntBASIC0.23□□□□□ -2.37
TNFP01375 AL121579.1-201ENST00000555129 305 ntBASIC0.23□□□□□ -2.37
TNFP01375 MIR4782-201ENST00000577987 79 ntBASIC0.23□□□□□ -2.37
TNFP01375 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.23□□□□□ -2.37
TNFP01375 AL590229.1-201ENST00000603497 542 ntBASIC0.23□□□□□ -2.37
TNFP01375 KATNBL1P5-201ENST00000605015 517 ntBASIC0.23□□□□□ -2.37
TNFP01375 AP001596.2-201ENST00000608410 312 ntBASIC0.23□□□□□ -2.37
TNFP01375 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.23□□□□□ -2.37
TNFP01375 RNU6-898P-201ENST00000365627 104 ntBASIC0.22□□□□□ -2.37
TNFP01375 MIR194-1-201ENST00000384892 85 ntBASIC0.22□□□□□ -2.37
TNFP01375 MIR1197-201ENST00000408818 88 ntBASIC0.22□□□□□ -2.37
TNFP01375 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC0.22□□□□□ -2.37
TNFP01375 GTF2IP3-201ENST00000433887 494 ntBASIC0.22□□□□□ -2.37
TNFP01375 AC002429.1-201ENST00000437672 148 ntBASIC0.22□□□□□ -2.37
TNFP01375 RNA5SP134-201ENST00000516492 96 ntBASIC0.22□□□□□ -2.37
TNFP01375 RNA5SP481-201ENST00000516814 122 ntBASIC0.22□□□□□ -2.37
TNFP01375 Z83818.1-201ENST00000603584 150 ntBASIC0.22□□□□□ -2.37
TNFP01375 AC091946.2-201ENST00000606105 291 ntBASIC0.22□□□□□ -2.37
TNFP01375 MIR1248-201ENST00000629190 106 ntBASIC0.22□□□□□ -2.37
TNFP01375 RNU6-655P-201ENST00000362858 107 ntBASIC0.21□□□□□ -2.38
TNFP01375 RNU6-529P-201ENST00000363383 104 ntBASIC0.21□□□□□ -2.38
TNFP01375 RNU6-331P-201ENST00000384724 107 ntBASIC0.21□□□□□ -2.38
TNFP01375 RNU6-910P-201ENST00000390844 107 ntBASIC0.21□□□□□ -2.38
TNFP01375 RNU6-1300P-201ENST00000391046 108 ntBASIC0.21□□□□□ -2.38
TNFP01375 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC0.21□□□□□ -2.38
TNFP01375 AL139421.1-201ENST00000423010 169 ntBASIC0.21□□□□□ -2.38
TNFP01375 AC002542.1-201ENST00000440683 193 ntBASIC0.21□□□□□ -2.38
TNFP01375 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.21□□□□□ -2.38
TNFP01375 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC0.21□□□□□ -2.38
TNFP01375 SNORA31.4-201ENST00000516049 129 ntBASIC0.21□□□□□ -2.38
TNFP01375 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC0.21□□□□□ -2.38
TNFP01375 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
TNFP01375 AC009509.4-201ENST00000619202 509 ntBASIC0.21□□□□□ -2.38
TNFP01375 AC013470.4-201ENST00000619978 986 ntBASIC0.21□□□□□ -2.38
TNFP01375 AC123767.1-202ENST00000620407 817 ntBASIC0.21□□□□□ -2.38
TNFP01375 RNU6-28P-201ENST00000362378 107 ntBASIC0.2□□□□□ -2.38
TNFP01375 RNU4-79P-201ENST00000362764 141 ntBASIC0.2□□□□□ -2.38
TNFP01375 SNORD12-201ENST00000391002 90 ntBASIC0.2□□□□□ -2.38
TNFP01375 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.2□□□□□ -2.38
TNFP01375 ISCA1P1-201ENST00000426679 387 ntBASIC0.2□□□□□ -2.38
TNFP01375 AC092423.1-201ENST00000430165 186 ntBASIC0.2□□□□□ -2.38
TNFP01375 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC0.2□□□□□ -2.38
TNFP01375 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.2□□□□□ -2.38
TNFP01375 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.2□□□□□ -2.38
TNFP01375 MTCYBP11-201ENST00000447254 1109 ntBASIC0.2□□□□□ -2.38
TNFP01375 BTF3P15-201ENST00000455606 336 ntBASIC0.2□□□□□ -2.38
TNFP01375 snoU13.8-201ENST00000458890 104 ntBASIC0.2□□□□□ -2.38
TNFP01375 AC118282.2-201ENST00000508739 374 ntBASIC0.2□□□□□ -2.38
TNFP01375 RNU6-390P-201ENST00000516259 103 ntBASIC0.2□□□□□ -2.38
TNFP01375 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC0.2□□□□□ -2.38
TNFP01375 AC022861.1-201ENST00000522981 663 ntBASIC0.2□□□□□ -2.38
TNFP01375 OR6C7P-201ENST00000547875 934 ntBASIC0.2□□□□□ -2.38
TNFP01375 AC137800.2-201ENST00000574375 120 ntBASIC0.2□□□□□ -2.38
TNFP01375 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
TNFP01375 VN1R83P-201ENST00000595685 445 ntBASIC0.2□□□□□ -2.38
TNFP01375 AL353765.1-201ENST00000605514 183 ntBASIC0.2□□□□□ -2.38
TNFP01375 TUG1_2.1-201ENST00000614234 87 ntBASIC0.2□□□□□ -2.38
TNFP01375 AL138726.1-201ENST00000614873 333 ntBASIC0.2□□□□□ -2.38
TNFP01375 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC0.2□□□□□ -2.38
TNFP01375 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.2□□□□□ -2.38
TNFP01375 SNORA63.3-201ENST00000362682 132 ntBASIC0.19□□□□□ -2.38
TNFP01375 Y_RNA.115-201ENST00000363272 98 ntBASIC0.19□□□□□ -2.38
TNFP01375 RNU6-839P-201ENST00000363347 108 ntBASIC0.19□□□□□ -2.38
TNFP01375 RNU6-716P-201ENST00000365621 103 ntBASIC0.19□□□□□ -2.38
TNFP01375 RNU6-348P-201ENST00000384386 107 ntBASIC0.19□□□□□ -2.38
TNFP01375 MIR29B2-201ENST00000385055 81 ntBASIC0.19□□□□□ -2.38
TNFP01375 MIR1295A-201ENST00000408463 79 ntBASIC0.19□□□□□ -2.38
TNFP01375 AC010631.1-201ENST00000474150 156 ntBASIC0.19□□□□□ -2.38
TNFP01375 AC098869.1-201ENST00000481627 292 ntBASIC0.19□□□□□ -2.38
TNFP01375 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.19□□□□□ -2.38
TNFP01375 AC110760.3-202ENST00000515177 371 ntBASIC0.19□□□□□ -2.38
TNFP01375 RNU6-760P-201ENST00000516078 97 ntBASIC0.19□□□□□ -2.38
TNFP01375 AL590705.4-201ENST00000532209 134 ntBASIC0.19□□□□□ -2.38
TNFP01375 AC092451.2-201ENST00000538746 658 ntBASIC0.19□□□□□ -2.38
TNFP01375 AC023932.2-201ENST00000603176 175 ntBASIC0.19□□□□□ -2.38
TNFP01375 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.19□□□□□ -2.38
TNFP01375 AC093913.1-201ENST00000614178 329 ntBASIC0.19□□□□□ -2.38
TNFP01375 AC084824.4-201ENST00000620106 731 ntBASIC0.19□□□□□ -2.38
TNFP01375 AC009268.2-201ENST00000621925 457 ntBASIC0.19□□□□□ -2.38
TNFP01375 LINC02555-201ENST00000563933 1951 ntBASIC0.19□□□□□ -2.38
TNFP01375 MTND4P14-201ENST00000435799 1354 ntBASIC0.19□□□□□ -2.38
TNFP01375 RNA5SP457-201ENST00000363657 124 ntBASIC0.18□□□□□ -2.38
TNFP01375 RNU6-512P-201ENST00000364438 103 ntBASIC0.18□□□□□ -2.38
TNFP01375 MTCO1P57-201ENST00000432182 261 ntBASIC0.18□□□□□ -2.38
TNFP01375 AC099677.2-201ENST00000436385 175 ntBASIC0.18□□□□□ -2.38
TNFP01375 AC020550.1-201ENST00000447385 163 ntBASIC0.18□□□□□ -2.38
TNFP01375 RNA5SP255-201ENST00000516370 107 ntBASIC0.18□□□□□ -2.38
TNFP01375 UTP23-205ENST00000520733 369 ntTSL 3 BASIC0.18□□□□□ -2.38
TNFP01375 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.18□□□□□ -2.38
TNFP01375 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.18□□□□□ -2.38
TNFP01375 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 173.6 ms