Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
LDB3O75112 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
LDB3O75112 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.79□□□□□ -1.96
LDB3O75112 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LDB3O75112 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.78□□□□□ -1.96
LDB3O75112 Y_RNA.153-201ENST00000363615 91 ntBASIC2.78□□□□□ -1.96
LDB3O75112 RNU6-1027P-201ENST00000383998 107 ntBASIC2.78□□□□□ -1.96
LDB3O75112 HMGN2P30-201ENST00000423237 256 ntBASIC2.78□□□□□ -1.96
LDB3O75112 AC098614.2-201ENST00000426040 255 ntBASIC2.78□□□□□ -1.96
LDB3O75112 MTCYBP9-201ENST00000431021 303 ntBASIC2.78□□□□□ -1.96
LDB3O75112 RPL23AP83-201ENST00000434984 473 ntBASIC2.78□□□□□ -1.96
LDB3O75112 CYCSP32-201ENST00000440548 321 ntBASIC2.78□□□□□ -1.96
LDB3O75112 RNU7-23P-201ENST00000459465 62 ntBASIC2.78□□□□□ -1.96
LDB3O75112 RPS29P2-201ENST00000479278 136 ntBASIC2.78□□□□□ -1.96
LDB3O75112 AC026801.1-201ENST00000497178 464 ntBASIC2.78□□□□□ -1.96
LDB3O75112 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.78□□□□□ -1.96
LDB3O75112 SNORA74D-201ENST00000516404 141 ntBASIC2.78□□□□□ -1.96
LDB3O75112 MIR892C-201ENST00000516410 77 ntBASIC2.78□□□□□ -1.96
LDB3O75112 RNU1-103P-201ENST00000516502 125 ntBASIC2.78□□□□□ -1.96
LDB3O75112 RNU6-572P-201ENST00000516724 80 ntBASIC2.78□□□□□ -1.96
LDB3O75112 RNU6-703P-201ENST00000516946 107 ntBASIC2.78□□□□□ -1.96
LDB3O75112 AC069113.1-201ENST00000517763 267 ntBASIC2.78□□□□□ -1.96
LDB3O75112 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.78□□□□□ -1.96
LDB3O75112 AC022080.3-201ENST00000544433 482 ntBASIC2.78□□□□□ -1.96
LDB3O75112 H3F3AP1-201ENST00000559984 334 ntBASIC2.78□□□□□ -1.96
LDB3O75112 AC008269.2-201ENST00000561915 1105 ntBASIC2.78□□□□□ -1.96
LDB3O75112 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.78□□□□□ -1.96
LDB3O75112 AC010653.1-201ENST00000571108 881 ntBASIC2.78□□□□□ -1.96
LDB3O75112 VN1R107P-201ENST00000601784 209 ntBASIC2.78□□□□□ -1.96
LDB3O75112 AL645944.1-201ENST00000603857 493 ntBASIC2.78□□□□□ -1.96
LDB3O75112 AC099778.2-201ENST00000610904 211 ntBASIC2.78□□□□□ -1.96
LDB3O75112 AC004852.3-201ENST00000614131 326 ntBASIC2.78□□□□□ -1.96
LDB3O75112 RMST_4.1-201ENST00000616886 107 ntBASIC2.78□□□□□ -1.96
LDB3O75112 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.78□□□□□ -1.96
LDB3O75112 U2.21-201ENST00000637295 81 ntBASIC2.78□□□□□ -1.96
LDB3O75112 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.78□□□□□ -1.96
LDB3O75112 AC000403.1-201ENST00000613696 3585 ntBASIC2.77□□□□□ -1.97
LDB3O75112 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.77□□□□□ -1.97
LDB3O75112 Y_RNA.2-201ENST00000362330 96 ntBASIC2.77□□□□□ -1.97
LDB3O75112 Y_RNA.48-201ENST00000362710 103 ntBASIC2.77□□□□□ -1.97
LDB3O75112 RNU6-884P-201ENST00000363889 107 ntBASIC2.77□□□□□ -1.97
LDB3O75112 RNA5SP139-201ENST00000364340 117 ntBASIC2.77□□□□□ -1.97
LDB3O75112 RNU6-1329P-201ENST00000365664 107 ntBASIC2.77□□□□□ -1.97
LDB3O75112 MIR517A-201ENST00000385001 87 ntBASIC2.77□□□□□ -1.97
LDB3O75112 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.77□□□□□ -1.97
LDB3O75112 Y_RNA.623-201ENST00000411128 95 ntBASIC2.77□□□□□ -1.97
LDB3O75112 RPL26P27-201ENST00000414397 437 ntBASIC2.77□□□□□ -1.97
LDB3O75112 AC007560.1-201ENST00000426912 237 ntBASIC2.77□□□□□ -1.97
LDB3O75112 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.77□□□□□ -1.97
LDB3O75112 AL627311.1-201ENST00000431514 115 ntBASIC2.77□□□□□ -1.97
LDB3O75112 AL078601.1-201ENST00000444542 271 ntBASIC2.77□□□□□ -1.97
LDB3O75112 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.77□□□□□ -1.97
LDB3O75112 CHEK2P4-201ENST00000450340 246 ntBASIC2.77□□□□□ -1.97
LDB3O75112 MTATP6P7-201ENST00000453315 681 ntBASIC2.77□□□□□ -1.97
LDB3O75112 RNU7-138P-201ENST00000459479 64 ntBASIC2.77□□□□□ -1.97
LDB3O75112 AC011005.2-201ENST00000487324 359 ntBASIC2.77□□□□□ -1.97
LDB3O75112 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.77□□□□□ -1.97
LDB3O75112 RN7SKP43-201ENST00000516173 320 ntBASIC2.77□□□□□ -1.97
LDB3O75112 RNA5SP380-201ENST00000517190 98 ntBASIC2.77□□□□□ -1.97
LDB3O75112 AC018889.1-201ENST00000605372 397 ntBASIC2.77□□□□□ -1.97
LDB3O75112 SNORD58B-201ENST00000607313 66 ntBASIC2.77□□□□□ -1.97
LDB3O75112 AC133104.2-201ENST00000615272 193 ntBASIC2.77□□□□□ -1.97
LDB3O75112 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.77□□□□□ -1.97
LDB3O75112 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.77□□□□□ -1.97
LDB3O75112 U6.99-201ENST00000637524 83 ntBASIC2.77□□□□□ -1.97
LDB3O75112 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LDB3O75112 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LDB3O75112 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
LDB3O75112 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
LDB3O75112 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.77□□□□□ -1.97
LDB3O75112 MTND5P27-201ENST00000428871 1720 ntBASIC2.76□□□□□ -1.97
LDB3O75112 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
LDB3O75112 AC091812.1-201ENST00000432235 1948 ntBASIC2.76□□□□□ -1.97
LDB3O75112 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
LDB3O75112 AL079305.1-201ENST00000623159 3008 ntBASIC2.76□□□□□ -1.97
LDB3O75112 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
LDB3O75112 RNU6-778P-201ENST00000363269 103 ntBASIC2.76□□□□□ -1.97
LDB3O75112 RNU6-450P-201ENST00000364654 107 ntBASIC2.76□□□□□ -1.97
LDB3O75112 RNU6-384P-201ENST00000364900 104 ntBASIC2.76□□□□□ -1.97
LDB3O75112 Y_RNA.324-201ENST00000365165 102 ntBASIC2.76□□□□□ -1.97
LDB3O75112 RNU1-73P-201ENST00000383971 164 ntBASIC2.76□□□□□ -1.97
LDB3O75112 RNU6-166P-201ENST00000384371 107 ntBASIC2.76□□□□□ -1.97
LDB3O75112 Y_RNA.512-201ENST00000384518 102 ntBASIC2.76□□□□□ -1.97
LDB3O75112 RNU6-907P-201ENST00000390924 102 ntBASIC2.76□□□□□ -1.97
LDB3O75112 NDUFS5P4-201ENST00000412983 318 ntBASIC2.76□□□□□ -1.97
LDB3O75112 AL592148.1-201ENST00000413568 445 ntBASIC2.76□□□□□ -1.97
LDB3O75112 BX276092.3-201ENST00000424182 230 ntBASIC2.76□□□□□ -1.97
LDB3O75112 USMG5P1-201ENST00000425964 177 ntBASIC2.76□□□□□ -1.97
LDB3O75112 TRIAP1P1-201ENST00000427062 225 ntBASIC2.76□□□□□ -1.97
LDB3O75112 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.76□□□□□ -1.97
LDB3O75112 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.76□□□□□ -1.97
LDB3O75112 AL583843.1-201ENST00000456070 346 ntBASIC2.76□□□□□ -1.97
LDB3O75112 AC113155.1-201ENST00000511141 769 ntBASIC2.76□□□□□ -1.97
LDB3O75112 SCGB1D5P-201ENST00000515134 247 ntBASIC2.76□□□□□ -1.97
LDB3O75112 MTCO2P24-201ENST00000515611 426 ntBASIC2.76□□□□□ -1.97
LDB3O75112 SNORA25.10-201ENST00000515926 124 ntBASIC2.76□□□□□ -1.97
LDB3O75112 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.76□□□□□ -1.97
LDB3O75112 AL391261.3-201ENST00000557194 520 ntBASIC2.76□□□□□ -1.97
LDB3O75112 MIR4782-201ENST00000577987 79 ntBASIC2.76□□□□□ -1.97
LDB3O75112 MIR3149-201ENST00000584629 83 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms