Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA3O43365 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXA3O43365 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA3O43365 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXA3O43365 AC004944.1-201ENST00000517807 3059 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA3O43365 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXA3O43365 AC002546.1-201ENST00000588041 2504 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA3O43365 RNA5SP124-201ENST00000362739 110 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 RNU6-1159P-201ENST00000362933 107 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 SNORD81.1-201ENST00000363064 77 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 RNU6-281P-201ENST00000384212 103 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 RNU6-622P-201ENST00000384272 103 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 MIR487A-201ENST00000385009 80 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 MIR10B-201ENST00000385011 110 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 Y_RNA.602-201ENST00000410535 92 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA3O43365 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA3O43365 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 SNORA31.6-201ENST00000516241 130 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 RNU6-58P-201ENST00000517143 103 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXA3O43365 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA3O43365 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA3O43365 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.19□□□□□ -1.9
HOXA3O43365 UBL5P4-201ENST00000562584 236 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA3O43365 AL109918.3-201ENST00000603072 338 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 AC073657.2-201ENST00000605661 303 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXA3O43365 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.19□□□□□ -1.9
HOXA3O43365 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA3O43365 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA3O43365 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA3O43365 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA3O43365 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
HOXA3O43365 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA3O43365 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA3O43365 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA3O43365 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA3O43365 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA3O43365 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA3O43365 AC092268.1-201ENST00000342691 405 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 Y_RNA.16-201ENST00000362421 102 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 SNORA71.3-201ENST00000362582 128 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 RNA5SP361-201ENST00000362686 118 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 RNU6-1285P-201ENST00000363480 105 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 SNORD113-8-201ENST00000363497 74 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 RNU6-137P-201ENST00000363680 108 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 RNU6-487P-201ENST00000365430 104 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA3O43365 RNU6-338P-201ENST00000383888 105 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 SNORD63-201ENST00000384262 68 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 Y_RNA.541-201ENST00000384640 113 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 Y_RNA.581-201ENST00000391017 97 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 RNU6-159P-201ENST00000391080 106 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 AL138878.1-201ENST00000405131 347 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 SNORD12B-201ENST00000410433 91 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 AL358075.3-201ENST00000426289 226 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA3O43365 AC010099.1-201ENST00000455434 375 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA3O43365 RNU6-1338P-201ENST00000516328 91 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 RNU6-1198P-201ENST00000516904 67 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 AL360157.1-201ENST00000565962 87 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 MIR5695-201ENST00000579717 85 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 AL138963.2-201ENST00000605137 226 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXA3O43365 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA3O43365 HSPA8P1-201ENST00000425843 1833 ntBASIC3.18□□□□□ -1.9
HOXA3O43365 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA3O43365 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.18□□□□□ -1.9
HOXA3O43365 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
HOXA3O43365 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA3O43365 AC093010.3-201ENST00000570269 15214 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXA3O43365 AL353746.1-201ENST00000566293 6881 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA3O43365 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
HOXA3O43365 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
HOXA3O43365 Y_RNA.539-201ENST00000384635 107 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 MIR449B-201ENST00000384995 97 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 RNU2-64P-201ENST00000411315 191 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 AL590135.1-201ENST00000422215 156 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXA3O43365 YME1L1P1-201ENST00000429435 297 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 snoU13.6-201ENST00000458785 104 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXA3O43365 RPS23P5-201ENST00000495419 428 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA3O43365 AC021231.3-201ENST00000558497 370 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 MIR3944-201ENST00000581277 108 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 BRDTP1-201ENST00000605735 677 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 AL138880.2-201ENST00000616214 239 ntBASIC3.17□□□□□ -1.9
HOXA3O43365 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA3O43365 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA3O43365 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms