Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.76□□□□□ -2.29
TRAV1-1A0A0B4J248 SNORD3E-201ENST00000362899 217 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-946P-201ENST00000383878 107 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AP000275.1-201ENST00000411943 390 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AL589872.1-201ENST00000426602 288 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 Z82205.1-201ENST00000428456 297 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AL135790.2-201ENST00000437701 267 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 CR769776.1-201ENST00000441254 787 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 DYNLT3P2-201ENST00000442517 295 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 OR2AQ1P-201ENST00000451972 200 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 SNRPGP9-201ENST00000456025 225 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 RPL39P28-201ENST00000465655 155 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC087343.1-201ENST00000477341 475 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 RPS23P4-201ENST00000487908 423 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 SNORA43.2-201ENST00000516652 128 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 BNIP3P6-201ENST00000549284 499 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC068620.3-201ENST00000602749 560 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AL136363.2-201ENST00000604173 851 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC144521.1-201ENST00000607148 956 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AL021368.1-201ENST00000607490 540 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC072039.2-201ENST00000608883 439 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC063943.3-201ENST00000615562 356 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 AC024940.5-201ENST00000622889 474 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 SCARNA4-202ENST00000625402 129 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 LINC02555-201ENST00000563933 1951 ntBASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
TRAV1-1A0A0B4J248 ICE2P2-201ENST00000483823 2787 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AL391516.1-201ENST00000554380 2449 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 MIR340-201ENST00000362125 95 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-212P-201ENST00000362642 104 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 SNORD33-201ENST00000362761 85 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 SNORD32B-201ENST00000364460 84 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 Y_RNA.255-201ENST00000364581 97 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-392P-201ENST00000364926 101 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 RNY3P13-201ENST00000365542 102 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU2-62P-201ENST00000410868 191 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 ELOCP17-201ENST00000414751 326 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 ELOCP9-201ENST00000418624 239 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 HMGN2P18-201ENST00000450680 270 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AC093852.1-201ENST00000503587 266 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AC112206.3-201ENST00000514578 389 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AP003465.2-201ENST00000602571 373 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AL606834.3-201ENST00000602615 496 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AL353778.1-201ENST00000603149 408 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AC112220.3-201ENST00000605502 502 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AP000654.2-201ENST00000605633 586 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-1192P-201ENST00000612197 107 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-489P-201ENST00000618289 107 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 AC233981.2-201ENST00000611524 1614 ntBASIC0.74□□□□□ -2.29
TRAV1-1A0A0B4J248 OR4G2P-201ENST00000328113 903 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 RNA5SP327-201ENST00000362494 101 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 EIF1P1-201ENST00000421436 341 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 MTND4P20-201ENST00000424125 869 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AL008629.1-201ENST00000438615 184 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 USP9YP17-201ENST00000444617 696 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 HMGN1P7-201ENST00000491722 313 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AL133373.1-201ENST00000497098 94 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 HMGN1P13-201ENST00000505795 138 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AC079140.2-201ENST00000506193 142 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AC116353.3-201ENST00000511215 249 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 Y_RNA.689-201ENST00000516589 107 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AC068587.4-201ENST00000533893 186 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AC015688.6-201ENST00000577737 104 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 NIFKP6-201ENST00000598115 845 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 AC012676.2-201ENST00000619258 186 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 RMST_7.1-201ENST00000621935 268 ntBASIC0.73□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-433P-201ENST00000363216 104 ntBASIC0.72□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-384P-201ENST00000364900 104 ntBASIC0.72□□□□□ -2.29
TRAV1-1A0A0B4J248 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-723P-201ENST00000383973 107 ntBASIC0.72□□□□□ -2.29
TRAV1-1A0A0B4J248 RNU6-190P-201ENST00000384154 102 ntBASIC0.72□□□□□ -2.29
TRAV1-1A0A0B4J248 MIR10A-201ENST00000385043 110 ntBASIC0.72□□□□□ -2.29
TRAV1-1A0A0B4J248 AL357139.1-201ENST00000407792 426 ntBASIC0.72□□□□□ -2.29
TRAV1-1A0A0B4J248 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
TRAV1-1A0A0B4J248 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms