Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RN7SKP164-201ENST00000516138 266 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 SNORD116-25-201ENST00000516517 92 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 CYP4A27P-201ENST00000567218 190 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 MIR3145-201ENST00000580727 82 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 DEFB117-201ENST00000602356 141 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 MIR6798-201ENST00000612887 67 ntBASIC4.46□□□□□ -1.7
USP3Q9Y6I4 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.46□□□□□ -1.7
USP3Q9Y6I4 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP3Q9Y6I4 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP3Q9Y6I4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP3Q9Y6I4 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP3Q9Y6I4 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP3Q9Y6I4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
USP3Q9Y6I4 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.45□□□□□ -1.7
USP3Q9Y6I4 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
USP3Q9Y6I4 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC4.45□□□□□ -1.7
USP3Q9Y6I4 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.45□□□□□ -1.7
USP3Q9Y6I4 RNU1-15P-201ENST00000353977 144 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 RNU6-50P-201ENST00000362356 103 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 RNU6-103P-201ENST00000363686 107 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 SNORA18.3-201ENST00000384122 132 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 RN7SKP53-201ENST00000411337 315 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 RPS15AP5-201ENST00000436276 388 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC4.45□□□□□ -1.7
USP3Q9Y6I4 AC084357.1-201ENST00000473404 255 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 AC091179.3-201ENST00000474761 144 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 MRPL49P2-201ENST00000521066 465 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.45□□□□□ -1.7
USP3Q9Y6I4 TVP23BP1-201ENST00000557500 617 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 MIR548X2-201ENST00000579776 100 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 RN7SL176P-201ENST00000580352 264 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 AC005520.5-201ENST00000613926 164 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 BMS1P21-201ENST00000634565 365 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC4.45□□□□□ -1.7
USP3Q9Y6I4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
USP3Q9Y6I4 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
USP3Q9Y6I4 AC106871.1-201ENST00000568324 3102 ntBASIC4.45□□□□□ -1.7
USP3Q9Y6I4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 Y_RNA.273-201ENST00000364703 102 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 RNU6-622P-201ENST00000384272 103 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 SNORA40-201ENST00000388090 126 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 HSPE1P12-201ENST00000412576 301 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 CYCSP48-201ENST00000417124 323 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 AC019205.3-201ENST00000424573 156 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 RNA5SP246-201ENST00000458909 119 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 SRI-210ENST00000490437 570 ntTSL 2 BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 RNU6-426P-201ENST00000516464 97 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 Vault.1-201ENST00000516474 102 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 RNA5SP360-201ENST00000516555 118 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 AC100767.1-201ENST00000528178 123 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 AC011602.1-201ENST00000546484 331 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 RN7SL600P-201ENST00000581811 299 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 AL365222.1-201ENST00000614661 98 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 MIR492-201ENST00000638676 116 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 AC010733.2-201ENST00000589496 5702 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 AC068254.2-201ENST00000623938 3577 ntBASIC4.44□□□□□ -1.7
USP3Q9Y6I4 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
USP3Q9Y6I4 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 AC139713.2-215ENST00000641428 5037 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 RNU6-151P-201ENST00000364158 107 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 RNA5SP189-201ENST00000364920 115 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 RNU6-1264P-201ENST00000383891 107 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 SNORA70C-201ENST00000384538 135 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 MIR569-201ENST00000385228 96 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 PTMAP5-201ENST00000393073 333 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 RPL21P17-201ENST00000397467 475 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 RNU6ATAC19P-201ENST00000408096 110 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 AC096649.2-201ENST00000416186 393 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 CR769767.1-201ENST00000436337 346 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 AC074290.1-201ENST00000448883 135 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 RPS26P28-201ENST00000470806 348 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 Y_RNA.797-201ENST00000515977 94 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 RNU6-966P-201ENST00000516479 104 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 RNU7-121P-201ENST00000516604 62 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms