Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 RNU6-1285P-201ENST00000363480 105 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 RNA5SP515-201ENST00000364570 118 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 RNU6-1280P-201ENST00000365211 107 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 MIR659-201ENST00000384963 97 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 MIR513C-201ENST00000401352 84 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 RNU6ATAC19P-201ENST00000408096 110 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 RNU2-52P-201ENST00000410680 190 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 RPL30P13-201ENST00000418873 348 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 AC078809.1-201ENST00000427601 140 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 AC112220.1-201ENST00000434628 355 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 AC011753.3-201ENST00000443436 406 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 RPS26P28-201ENST00000470806 348 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 AC015795.1-201ENST00000513669 327 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 Y_RNA.686-201ENST00000516548 134 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 SNORA31.23-201ENST00000517219 133 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 NACAP3-201ENST00000552100 481 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 AL451007.1-201ENST00000595491 289 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 MIR6891-201ENST00000618788 93 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 AC006971.1-201ENST00000407916 4486 ntBASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.01□□□□□ -1.77
HIF3AQ9Y2N7 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
HIF3AQ9Y2N7 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4□□□□□ -1.77
HIF3AQ9Y2N7 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HIF3AQ9Y2N7 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4□□□□□ -1.77
HIF3AQ9Y2N7 SNORA70F-201ENST00000384142 135 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 RPL23AP48-201ENST00000406913 488 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 RNU6-1199P-201ENST00000411249 104 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 TPT1P12-201ENST00000448968 492 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 AL162591.2-201ENST00000449634 317 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 U8.19-201ENST00000459095 133 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 Y_RNA.637-201ENST00000459424 114 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 RPS27AP10-201ENST00000496103 208 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC4□□□□□ -1.77
HIF3AQ9Y2N7 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC4□□□□□ -1.77
HIF3AQ9Y2N7 AC100767.1-201ENST00000528178 123 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4□□□□□ -1.77
HIF3AQ9Y2N7 MTND6P33-201ENST00000571794 183 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 AL160290.3-201ENST00000604869 165 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 FAM25E-202ENST00000608562 189 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 AL359198.2-201ENST00000611836 194 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 AC008873.1-201ENST00000625051 138 ntBASIC4□□□□□ -1.77
HIF3AQ9Y2N7 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4□□□□□ -1.77
HIF3AQ9Y2N7 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC4□□□□□ -1.77
HIF3AQ9Y2N7 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
HIF3AQ9Y2N7 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4□□□□□ -1.77
HIF3AQ9Y2N7 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 AC092268.1-201ENST00000342691 405 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 RNU6-727P-201ENST00000363592 107 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 Y_RNA.179-201ENST00000363844 90 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 SNORD113.2-201ENST00000364166 89 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 RNU4-10P-201ENST00000364383 140 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 RNU6-763P-201ENST00000390865 106 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 AL512633.1-201ENST00000399931 655 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 AC010154.1-201ENST00000425857 269 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 RNA5SP54-201ENST00000516951 92 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 CKS1BP7-201ENST00000522230 235 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 AP001781.1-201ENST00000530977 207 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 AP002001.1-203ENST00000534002 267 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 AC021231.3-201ENST00000558497 370 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 AC009163.5-201ENST00000575421 637 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 MIR4480-201ENST00000582492 71 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 MFSD8-242ENST00000641690 4199 ntBASIC3.99□□□□□ -1.77
HIF3AQ9Y2N7 AC010300.1-201ENST00000600671 5134 ntBASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 Y_RNA.329-201ENST00000365209 107 ntBASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 RNU6-80P-201ENST00000384195 107 ntBASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 RNU6-381P-201ENST00000391259 108 ntBASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 IGLV3-26-201ENST00000520756 302 ntBASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 AC112693.2-201ENST00000556538 232 ntBASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 AC009127.3-201ENST00000570531 403 ntBASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 MIR3690-201ENST00000580266 75 ntBASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 MIR3529-201ENST00000637713 78 ntBASIC3.98□□□□□ -1.77
HIF3AQ9Y2N7 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms