Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 AC058791.1-201ENST00000608412 3198 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 ADAM3A-203ENST00000461344 2157 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 FAM35CP-201ENST00000554755 2470 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VSX1Q9NZR4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.126-201ENST00000363382 111 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.153-201ENST00000363615 91 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 MIR628-201ENST00000385229 95 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 MT-TG-201ENST00000387429 68 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
VSX1Q9NZR4 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
VSX1Q9NZR4 SNORA12.2-201ENST00000391040 156 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 RNU6-1109P-201ENST00000391187 107 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VSX1Q9NZR4 MIR190B-201ENST00000401119 79 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 AC245291.1-201ENST00000419501 328 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 AL353705.1-201ENST00000433468 480 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 RNU7-23P-201ENST00000459465 62 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 MRPL42P6-201ENST00000486397 371 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 AC110794.1-201ENST00000505816 425 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.19□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.706-201ENST00000516933 99 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 CKS1BP7-201ENST00000522230 235 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 COX6CP5-201ENST00000527162 228 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.19□□□□□ -1.9
VSX1Q9NZR4 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.19□□□□□ -1.9
VSX1Q9NZR4 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.19□□□□□ -1.9
VSX1Q9NZR4 AC060766.3-201ENST00000591442 263 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 AC006006.1-201ENST00000603082 144 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 AL355877.2-201ENST00000603670 358 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.19□□□□□ -1.9
VSX1Q9NZR4 AC233981.2-201ENST00000611524 1614 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 MFSD8-233ENST00000641482 4860 ntBASIC3.19□□□□□ -1.9
VSX1Q9NZR4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
VSX1Q9NZR4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AL353743.1-202ENST00000431724 1695 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 RNU6-843P-201ENST00000384454 104 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.592-201ENST00000410274 109 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 RNA5SP494-201ENST00000410653 129 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AP000907.1-201ENST00000428428 510 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 GOT2P5-201ENST00000433995 546 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AC243964.1-201ENST00000441814 261 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 RPS27P29-201ENST00000463110 252 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 RN7SL594P-201ENST00000470590 287 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 RNU6-635P-201ENST00000516651 102 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.715-201ENST00000517082 110 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AC009812.2-201ENST00000517657 457 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AC026333.2-201ENST00000542164 106 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 MIR4425-201ENST00000580572 84 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 RPL23AP78-201ENST00000599928 470 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AC019176.2-201ENST00000611579 315 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AC068831.7-201ENST00000616954 363 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AC022149.2-201ENST00000621061 203 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AP003355.3-201ENST00000623465 114 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AC091903.1-201ENST00000624322 454 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 SCARNA4-201ENST00000629045 128 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AC241585.2-209ENST00000638217 143 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AC010680.1-201ENST00000590024 3590 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VSX1Q9NZR4 AC004944.1-201ENST00000517807 3059 ntBASIC3.18□□□□□ -1.9
VSX1Q9NZR4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 SNORD115-32-201ENST00000364079 82 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 RNU6-702P-201ENST00000364982 107 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 RNU6-1286P-201ENST00000383871 107 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.485-201ENST00000384395 102 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 U8.11-201ENST00000384699 133 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 U8.12-201ENST00000384701 133 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 MIR568-201ENST00000385036 95 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AC078809.1-201ENST00000427601 140 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AL731563.1-201ENST00000442202 214 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 OSTCP8-201ENST00000445117 448 ntBASIC3.17□□□□□ -1.9
VSX1Q9NZR4 AL441985.1-201ENST00000457727 251 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 154.5 ms