Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AL132765.2-201ENST00000610812 351 ntBASIC2.76□□□□□ -1.97
PCDH9Q9HC56 AC011890.2-201ENST00000613393 294 ntBASIC2.76□□□□□ -1.97
PCDH9Q9HC56 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
PCDH9Q9HC56 ADAM3A-203ENST00000461344 2157 ntBASIC2.76□□□□□ -1.97
PCDH9Q9HC56 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PCDH9Q9HC56 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
PCDH9Q9HC56 RNU1-100P-201ENST00000365255 165 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 AL445529.1-201ENST00000398713 389 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 RNA5SP21-201ENST00000410917 96 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.75□□□□□ -1.97
PCDH9Q9HC56 AC098831.1-201ENST00000440661 216 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.75□□□□□ -1.97
PCDH9Q9HC56 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.75□□□□□ -1.97
PCDH9Q9HC56 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.75□□□□□ -1.97
PCDH9Q9HC56 RN7SKP24-201ENST00000515888 284 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 RNU6-581P-201ENST00000516214 105 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 RNU6-826P-201ENST00000516827 104 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 MIR4635-201ENST00000583759 79 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 MIR4795-201ENST00000584182 89 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 AC023043.2-201ENST00000589678 1026 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 ELOCP5-201ENST00000604924 333 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 AL033523.1-201ENST00000605153 153 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 AL359697.1-201ENST00000624879 587 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 MIR1302-1-201ENST00000637932 143 ntBASIC2.75□□□□□ -1.97
PCDH9Q9HC56 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.75□□□□□ -1.97
PCDH9Q9HC56 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
PCDH9Q9HC56 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
PCDH9Q9HC56 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 Y_RNA.58-201ENST00000362807 102 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 Y_RNA.154-201ENST00000363624 102 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 SNORA80A-201ENST00000363922 136 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 RNY3P1-201ENST00000365085 102 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 RNY3-201ENST00000365484 102 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 Y_RNA.490-201ENST00000384413 102 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 NDUFB4P4-201ENST00000404822 243 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 BPY2DP-201ENST00000422208 265 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 RPL7P37-201ENST00000425095 738 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AC107399.1-201ENST00000451226 265 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AC092001.1-201ENST00000453012 261 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 RPS27P27-201ENST00000498779 255 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 RPL39P5-202ENST00000512505 151 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 RN7SKP132-201ENST00000516001 208 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AP005639.2-201ENST00000527592 928 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AC093027.1-201ENST00000546698 429 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 NACAP3-201ENST00000552100 481 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AC007151.1-201ENST00000572774 483 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AC087045.1-201ENST00000605856 382 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AC064836.2-201ENST00000609491 462 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 MIR7106-201ENST00000612419 65 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AL359314.1-201ENST00000616913 261 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 MIR3199-2-201ENST00000636243 86 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 ZNF519P1-201ENST00000449011 1626 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.74□□□□□ -1.97
PCDH9Q9HC56 AC010680.1-201ENST00000590024 3590 ntBASIC2.74□□□□□ -1.97
PCDH9Q9HC56 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.73□□□□□ -1.97
PCDH9Q9HC56 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.73□□□□□ -1.97
PCDH9Q9HC56 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.73□□□□□ -1.97
PCDH9Q9HC56 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
PCDH9Q9HC56 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.73□□□□□ -1.97
PCDH9Q9HC56 Y_RNA.61-201ENST00000362835 102 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 Y_RNA.67-201ENST00000362870 100 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 VTRNA1-1-201ENST00000363120 99 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 RNU6-525P-201ENST00000363685 104 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 RNU6-1280P-201ENST00000365211 107 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 RNU6-128P-201ENST00000383976 107 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 RNU6-72P-201ENST00000384285 79 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 U3.37-201ENST00000408528 213 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.73□□□□□ -1.97
PCDH9Q9HC56 RNU2-25P-201ENST00000411041 191 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 RNU6-1304P-201ENST00000411374 106 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AC074085.1-201ENST00000413598 418 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AL096701.2-201ENST00000416920 238 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AL139396.1-201ENST00000421137 167 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 RPS3AP52-201ENST00000435639 297 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AL714022.1-201ENST00000439897 151 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AC130509.1-201ENST00000464158 433 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AC008571.1-201ENST00000467232 300 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 RPL23AP45-201ENST00000476406 468 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AC096576.1-201ENST00000489014 359 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AL121821.2-201ENST00000556081 394 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 GTF3AP2-201ENST00000557014 266 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AL355375.2-201ENST00000574825 175 ntBASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.73□□□□□ -1.97
PCDH9Q9HC56 AL121917.1-203ENST00000605534 577 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms