Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL139413.1-201ENST00000421309 217 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 HMGB1P31-201ENST00000437242 427 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 AC007547.1-201ENST00000462177 490 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 AC026436.1-201ENST00000510537 270 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 RN7SKP132-201ENST00000516001 208 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 Y_RNA.665-201ENST00000516177 98 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 RNU6-1038P-201ENST00000516516 104 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 GLYCAM1-201ENST00000546596 285 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 AC006199.1-201ENST00000548728 219 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 MIR3117-201ENST00000584034 78 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 AC005498.1-201ENST00000592125 465 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 ATP1B3P1-201ENST00000605365 821 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 HMGB1P24-202ENST00000615653 685 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 UCA1.1-201ENST00000620952 75 ntBASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC28BQ9BUN5 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 RNU6-1303P-201ENST00000364841 107 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 RNU6-898P-201ENST00000365627 104 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 MIR23B-201ENST00000384832 97 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 RNU2-52P-201ENST00000410680 190 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 HIGD1AP2-201ENST00000446367 280 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 AL139109.1-201ENST00000455491 297 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 AC006026.2-201ENST00000457376 180 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 RPL23AP49-201ENST00000492925 468 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 TRBVA-201ENST00000498804 316 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 RNU6-1069P-201ENST00000516612 133 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 AP004607.1-201ENST00000524456 203 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 AC018638.8-201ENST00000588755 281 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 BNIP3P25-201ENST00000596023 559 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 APOOP1-201ENST00000604695 592 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 BNIP3P10-201ENST00000605360 577 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 AC002044.1-201ENST00000606707 158 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 Z69720.2-201ENST00000624755 279 ntBASIC2.25□□□□□ -2.05
CCDC28BQ9BUN5 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 Y_RNA.72-201ENST00000362894 103 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 U3.40-201ENST00000408706 208 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 Y_RNA.615-201ENST00000410769 117 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC016831.2-201ENST00000417179 352 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 RPL30P16-201ENST00000419341 429 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 ARL5AP4-201ENST00000430731 512 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 NDUFA5P4-201ENST00000436704 385 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 RNU7-138P-201ENST00000459479 64 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC116353.2-201ENST00000505332 712 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 FAM206BP-201ENST00000510179 541 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 SNORA19.2-201ENST00000516013 114 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 RPL7P20-201ENST00000520308 745 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC118273.2-201ENST00000532092 465 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC023050.3-201ENST00000541142 333 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 PSMA3P-201ENST00000555485 635 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC007151.1-201ENST00000572774 483 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 MIR5195-201ENST00000583555 115 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 MIR4448-201ENST00000584360 86 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC103810.6-201ENST00000606708 136 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC098657.3-201ENST00000620434 263 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 MIR6766-201ENST00000622641 72 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 DUXAP9-208ENST00000622815 614 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC099654.14-201ENST00000638599 341 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC004944.1-201ENST00000517807 3059 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 AC010889.1-201ENST00000566193 2666 ntBASIC2.24□□□□□ -2.05
CCDC28BQ9BUN5 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 SNORD113-7-201ENST00000363762 77 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 RNU6-1280P-201ENST00000365211 107 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 Y_RNA.373-201ENST00000365600 103 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AL356776.1-201ENST00000406574 447 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 PGBD4P6-201ENST00000421501 610 ntBASIC2.23□□□□□ -2.05
CCDC28BQ9BUN5 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms