Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 IMMP1LP2-201ENST00000552954 492 ntBASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 DNAJC8P1-201ENST00000554535 372 ntBASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 FRG2DP-202ENST00000566967 323 ntBASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 AC009163.5-201ENST00000575421 637 ntBASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 MIR4513-201ENST00000581077 86 ntBASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 AC097372.5-201ENST00000623665 376 ntBASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 AL359757.2-201ENST00000624309 274 ntBASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.05□□□□□ -1.92
PAAF1Q9BRP4 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 RNU4-79P-201ENST00000362764 141 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 SNORD56.1-201ENST00000362913 68 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 RNU6-799P-201ENST00000363567 107 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 RNU6-1317P-201ENST00000364582 104 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 Y_RNA.259-201ENST00000364619 101 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 RNU6-593P-201ENST00000364716 112 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 RNU6-1027P-201ENST00000383998 107 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 SNORA48.8-201ENST00000391324 134 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 MTCO2P27-201ENST00000420740 428 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 RPL31P12-201ENST00000422587 358 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 NUP35P1-201ENST00000422734 947 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 Z82205.1-201ENST00000428456 297 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 Y_RNA.632-201ENST00000459189 102 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 MED28P2-201ENST00000475771 317 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 RPS27P26-201ENST00000494583 239 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 RNU6-1016P-201ENST00000516689 94 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 AC107016.2-201ENST00000547968 190 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 CR383656.8-201ENST00000549046 145 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 MIR3162-201ENST00000581818 82 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 MIR3529-201ENST00000637713 78 ntBASIC3.04□□□□□ -1.92
PAAF1Q9BRP4 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 AL355596.1-201ENST00000565399 3996 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 MTND4P23-201ENST00000447723 1363 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 MIR449A-201ENST00000362113 91 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 RNU6-105P-201ENST00000363909 104 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 RNU6-336P-201ENST00000364891 107 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 MIR521-1-201ENST00000384902 87 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 AL513475.1-201ENST00000406602 315 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 RNU4-14P-201ENST00000410858 122 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 RNU6-1304P-201ENST00000411374 106 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 AL365496.1-201ENST00000426885 215 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 GZMAP1-201ENST00000503054 631 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 AC114801.2-201ENST00000503825 781 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 MTCYBP40-201ENST00000509390 1135 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 MIR3186-201ENST00000577404 85 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 MIR5690-201ENST00000583739 73 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 AC090617.7-201ENST00000623952 126 ntBASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PAAF1Q9BRP4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 Y_RNA.509-201ENST00000384506 99 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 RNA5SP184-201ENST00000411071 108 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 RPL23AP22-201ENST00000437556 453 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AC013470.1-201ENST00000453438 462 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 SNORD109B-201ENST00000458961 67 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 SNORD109A-201ENST00000459128 67 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AC133134.1-201ENST00000466800 359 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AC008571.1-201ENST00000467232 300 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 ACA59.1-201ENST00000515966 143 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AC091152.3-201ENST00000604227 325 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AC018889.1-201ENST00000605372 397 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AC024581.2-201ENST00000619986 252 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AC110079.1-202ENST00000635213 138 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 MTND4LP32-201ENST00000636111 270 ntBASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.02□□□□□ -1.93
PAAF1Q9BRP4 AL136360.1-201ENST00000503377 1900 ntBASIC3.01□□□□□ -1.93
PAAF1Q9BRP4 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
PAAF1Q9BRP4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.01□□□□□ -1.93
PAAF1Q9BRP4 AC008669.1-201ENST00000565823 2178 ntBASIC3.01□□□□□ -1.93
PAAF1Q9BRP4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
PAAF1Q9BRP4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.01□□□□□ -1.93
PAAF1Q9BRP4 Y_RNA.535-201ENST00000384612 99 ntBASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms