Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AC004383.1-201ENST00000438135 289 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 RN7SL297P-201ENST00000483161 293 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 RNU6-1069P-201ENST00000516612 133 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 SNORA43.2-201ENST00000516652 128 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 RPPH1-2P-201ENST00000516688 293 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AL118558.2-201ENST00000556294 238 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 VN1R107P-201ENST00000601784 209 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AL359757.2-201ENST00000624309 274 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 U4.7-201ENST00000638126 106 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 ZNF658B-202ENST00000615961 3375 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AL109809.4-201ENST00000603520 2185 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 RNU6-1303P-201ENST00000364841 107 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 SNORD115-47-201ENST00000391226 86 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 EIF4E2P1-201ENST00000393781 255 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 RNU4-53P-201ENST00000410828 140 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 PGBD4P6-201ENST00000421501 610 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AL365400.1-201ENST00000431854 640 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AL121601.2-201ENST00000438019 707 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AC104389.3-201ENST00000445629 235 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 HMGN2P26-201ENST00000463169 339 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 MED28P2-201ENST00000475771 317 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AC018437.1-201ENST00000492214 406 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 MIR4446-201ENST00000578505 67 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 MIR3616-201ENST00000584070 92 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AC010525.2-201ENST00000590920 195 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 VN1R80P-201ENST00000597126 338 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AC002044.1-201ENST00000606707 158 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AC092807.2-201ENST00000609367 243 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AC007014.2-201ENST00000615581 479 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AC244517.12-201ENST00000623581 663 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AC024614.3-201ENST00000637860 256 ntBASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC3Q9BQI4 AC138393.1-203ENST00000327086 343 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 Y_RNA.100-201ENST00000363141 102 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 Y_RNA.157-201ENST00000363638 102 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 RNU6-461P-201ENST00000364195 107 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 Y_RNA.295-201ENST00000364918 102 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 Y_RNA.378-201ENST00000365652 113 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 RNA5SP390-201ENST00000410191 113 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 SNORD56-201ENST00000413522 71 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 AC010095.1-201ENST00000443543 144 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 SCARNA17.1-201ENST00000516211 143 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 SCARNA17.2-201ENST00000516334 143 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 SNORA31.15-201ENST00000516771 132 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 RNU6-826P-201ENST00000516827 104 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 AC109329.1-201ENST00000518744 317 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 CKS1BP7-201ENST00000522230 235 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 ELOCP31-201ENST00000540463 467 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 MIR5092-201ENST00000583139 88 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 AC008121.1-201ENST00000603244 268 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 AC107304.1-201ENST00000604229 296 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 APOOP1-201ENST00000604695 592 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 RMST_3.1-201ENST00000611651 109 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 SCARNA17.4-201ENST00000614296 143 ntBASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC3Q9BQI4 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 RNU6-78P-201ENST00000362897 107 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 SNORD114-30-201ENST00000364448 72 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 RNU5E-7P-201ENST00000365290 117 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 MIR147B-201ENST00000390185 80 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 RNA5SP219-201ENST00000390940 113 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 RNU4-26P-201ENST00000410270 107 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AC074117.2-201ENST00000417130 397 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 Z98742.3-201ENST00000418637 326 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms