Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS35Q96QK1 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.99□□□□□ -2.09
VPS35Q96QK1 AC009314.1-201ENST00000603871 304 ntBASIC1.99□□□□□ -2.09
VPS35Q96QK1 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
VPS35Q96QK1 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.99□□□□□ -2.09
VPS35Q96QK1 SNORD114-1-201ENST00000362705 72 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 RNU6-456P-201ENST00000384493 107 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 HMGN2P39-201ENST00000398005 273 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 CBX3P9-201ENST00000402326 552 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 RNU4-46P-201ENST00000410818 138 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.98□□□□□ -2.09
VPS35Q96QK1 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.98□□□□□ -2.09
VPS35Q96QK1 MTND1P27-201ENST00000451117 902 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 RPS27AP8-201ENST00000452665 445 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.98□□□□□ -2.09
VPS35Q96QK1 RPL30P12-201ENST00000474666 353 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.98□□□□□ -2.09
VPS35Q96QK1 RNU2-44P-201ENST00000516795 194 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.98□□□□□ -2.09
VPS35Q96QK1 NDUFA5P6-201ENST00000542110 379 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.98□□□□□ -2.09
VPS35Q96QK1 Y_RNA.783-201ENST00000613546 102 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 SDR42E1P4-201ENST00000620894 481 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 YWHAEP7-203ENST00000622054 312 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 AC007792.1-201ENST00000623023 402 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS35Q96QK1 AC002543.1-201ENST00000299783 1954 ntBASIC1.98□□□□□ -2.09
VPS35Q96QK1 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
VPS35Q96QK1 RNU4-48P-201ENST00000365559 182 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 RN7SKP142-201ENST00000411236 328 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 BTF3L4P1-201ENST00000413813 468 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 PIGFP2-201ENST00000421400 651 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 AC027124.2-201ENST00000428249 105 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 AL669831.1-202ENST00000428504 417 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS35Q96QK1 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.97□□□□□ -2.09
VPS35Q96QK1 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.97□□□□□ -2.09
VPS35Q96QK1 GTF2IP13-201ENST00000438487 386 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS35Q96QK1 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.97□□□□□ -2.09
VPS35Q96QK1 KATNBL1P3-201ENST00000443475 909 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 AL513124.1-201ENST00000450410 614 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 AC022364.2-201ENST00000457963 554 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 RNU6-667P-201ENST00000517186 102 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.97□□□□□ -2.09
VPS35Q96QK1 AP000763.2-201ENST00000540641 163 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS35Q96QK1 MIR3913-1-201ENST00000577744 102 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS35Q96QK1 AC008945.2-201ENST00000606056 604 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 AL162373.1-201ENST00000620433 407 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 Z69720.2-201ENST00000624755 279 ntBASIC1.97□□□□□ -2.09
VPS35Q96QK1 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.97□□□□□ -2.09
VPS35Q96QK1 AC131280.1-202ENST00000624067 4211 ntBASIC1.96□□□□□ -2.09
VPS35Q96QK1 RNU6-181P-201ENST00000363225 107 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 RNU6-1303P-201ENST00000364841 107 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 RNA5SP160-201ENST00000364866 120 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
VPS35Q96QK1 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS35Q96QK1 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS35Q96QK1 RPL38P4-201ENST00000502376 214 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 HMGB1P35-201ENST00000503360 598 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.96□□□□□ -2.1
VPS35Q96QK1 RNU6-445P-201ENST00000516949 107 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS35Q96QK1 AP003392.2-201ENST00000527269 208 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 AP002963.1-201ENST00000530590 184 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 MIR4703-201ENST00000577728 79 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 AC026271.5-201ENST00000577873 130 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 MIR5089-201ENST00000580047 84 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 AC040904.1-201ENST00000590850 223 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 AC078899.2-201ENST00000595282 212 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.96□□□□□ -2.1
VPS35Q96QK1 AC012493.3-201ENST00000604494 112 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 AC121247.2-201ENST00000604776 136 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 Z82243.1-201ENST00000609432 473 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 AC073114.1-201ENST00000612027 490 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 AL159153.1-201ENST00000619688 317 ntBASIC1.96□□□□□ -2.1
VPS35Q96QK1 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
VPS35Q96QK1 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.96□□□□□ -2.1
VPS35Q96QK1 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
VPS35Q96QK1 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
VPS35Q96QK1 Y_RNA.324-201ENST00000365165 102 ntBASIC1.95□□□□□ -2.1
VPS35Q96QK1 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
VPS35Q96QK1 RNU2-32P-201ENST00000411193 191 ntBASIC1.95□□□□□ -2.1
VPS35Q96QK1 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.95□□□□□ -2.1
VPS35Q96QK1 AL591043.1-201ENST00000432461 424 ntBASIC1.95□□□□□ -2.1
VPS35Q96QK1 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.95□□□□□ -2.1
VPS35Q96QK1 AL031667.1-201ENST00000440222 725 ntBASIC1.95□□□□□ -2.1
VPS35Q96QK1 AC007969.2-201ENST00000441891 191 ntBASIC1.95□□□□□ -2.1
VPS35Q96QK1 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.95□□□□□ -2.1
VPS35Q96QK1 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.95□□□□□ -2.1
VPS35Q96QK1 AL137159.1-201ENST00000452808 512 ntBASIC1.95□□□□□ -2.1
VPS35Q96QK1 MTCO2P6-201ENST00000463134 685 ntBASIC1.95□□□□□ -2.1
VPS35Q96QK1 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.95□□□□□ -2.1
VPS35Q96QK1 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC1.95□□□□□ -2.1
VPS35Q96QK1 RN7SKP256-201ENST00000517201 314 ntBASIC1.95□□□□□ -2.1
VPS35Q96QK1 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.95□□□□□ -2.1
VPS35Q96QK1 MIR3935-201ENST00000583472 104 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms