Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC069528.2-201ENST00000624849 1991 ntBASIC3.4□□□□□ -1.86
CCDC140Q96MF4 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.86
CCDC140Q96MF4 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 RNU1-62P-201ENST00000362599 164 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 Y_RNA.230-201ENST00000364348 109 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 RNU6-200P-201ENST00000364743 107 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 MIR591-201ENST00000385290 95 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 MIR3065-201ENST00000390137 79 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 SNORA12-201ENST00000391162 147 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 MIR1911-201ENST00000410783 80 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 AL160275.2-201ENST00000412010 394 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 RPL23AP26-201ENST00000412728 464 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 RPL23AP36-201ENST00000413895 458 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 AL356387.2-201ENST00000422272 243 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 SCARNA17.1-201ENST00000516211 143 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 SCARNA17.2-201ENST00000516334 143 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 IGLVIV-65-201ENST00000517313 360 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 MIR5006-201ENST00000583027 110 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 AC008745.1-201ENST00000604064 271 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 AL670379.2-201ENST00000604983 252 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 SCARNA17.4-201ENST00000614296 143 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 U2.14-201ENST00000615943 113 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 AC002064.3-201ENST00000623448 346 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 AC008785.1-201ENST00000624475 456 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 U6.98-201ENST00000637157 84 ntBASIC3.4□□□□□ -1.87
CCDC140Q96MF4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC140Q96MF4 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AC008725.1-201ENST00000605123 2263 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 RNA5SP502-201ENST00000362694 119 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 RNU6-326P-201ENST00000365480 107 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 Y_RNA.415-201ENST00000384012 112 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 SNORA46.1-201ENST00000391069 153 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 ELOCP21-201ENST00000412558 336 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 POLR2KP2-201ENST00000438155 177 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AC140059.1-201ENST00000489238 361 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AC015795.1-201ENST00000513669 327 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 RNU2-44P-201ENST00000516795 194 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AC130289.1-201ENST00000577321 73 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 MIR4715-201ENST00000584117 79 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AC011471.1-201ENST00000585766 187 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 RPL30P11-203ENST00000598995 310 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AC005562.2-201ENST00000618264 111 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 AC090517.3-201ENST00000625170 141 ntBASIC3.39□□□□□ -1.87
CCDC140Q96MF4 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
CCDC140Q96MF4 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 AC011266.1-201ENST00000624119 3569 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 SNORA25.1-201ENST00000362326 128 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 Y_RNA.44-201ENST00000362676 108 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 SNORA62-201ENST00000365493 153 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 Y_RNA.383-201ENST00000383855 97 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 Y_RNA.446-201ENST00000384178 104 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 RNA5SP475-201ENST00000410568 110 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 RAB28P5-201ENST00000427490 651 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 MRPS10P1-201ENST00000448483 130 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 RPL35AP15-201ENST00000468042 339 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 RNU4-71P-201ENST00000516258 113 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 RNU1-117P-201ENST00000517041 158 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 DEFB131C-201ENST00000528817 165 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 AC027176.1-201ENST00000560204 514 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 AC022655.2-201ENST00000577280 318 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 MIR4697-201ENST00000582977 78 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC140Q96MF4 AC008739.2-201ENST00000597006 317 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 IPO5P1-202ENST00000600039 287 ntBASIC3.38□□□□□ -1.87
CCDC140Q96MF4 AC009779.6-201ENST00000603972 165 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms