Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 USMG5P1-201ENST00000425964 177 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 AC008571.1-201ENST00000467232 300 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 RPL7P42-201ENST00000481005 679 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 ACA59.1-201ENST00000515966 143 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 AC010186.2-204ENST00000537668 439 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 AC011494.1-201ENST00000596454 237 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 AC009314.1-201ENST00000603871 304 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 AC018889.1-201ENST00000605372 397 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 AL138880.2-201ENST00000616214 239 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 MIR622-201ENST00000638396 96 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 RPL9P7-201ENST00000330965 580 ntBASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 RNA5SP295-201ENST00000362655 121 ntBASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 RNU6-898P-201ENST00000365627 104 ntBASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 AL513043.1-201ENST00000439124 535 ntBASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 snoU13.28-201ENST00000459235 104 ntBASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 RPL9P9-202ENST00000466501 579 ntBASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 RPS27AP10-201ENST00000496103 208 ntBASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 AC109446.1-201ENST00000566172 220 ntBASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 AC005899.2-201ENST00000584353 90 ntBASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 MTND4LP5-201ENST00000605152 292 ntBASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 AC091152.2-201ENST00000591628 2569 ntBASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SMC1BQ8NDV3 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 RNU6-78P-201ENST00000362897 107 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 Y_RNA.326-201ENST00000365176 113 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 Z98749.2-208ENST00000381646 500 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 Y_RNA.473-201ENST00000384333 102 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 MIR559-201ENST00000385188 96 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AL513475.1-201ENST00000406602 315 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AL133396.1-201ENST00000432048 687 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 RPL23AP50-201ENST00000434149 455 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AC098831.1-201ENST00000440661 216 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AC124916.1-201ENST00000444020 547 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 SSXP4-201ENST00000451349 245 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AC114801.2-201ENST00000503825 781 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AP002770.2-201ENST00000543613 532 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AC103996.1-201ENST00000555468 102 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AL391261.3-201ENST00000557194 520 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AC020661.2-201ENST00000560114 134 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 KLKP1-201ENST00000595979 403 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AC006111.3-201ENST00000622137 383 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 U4.7-201ENST00000638126 106 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 AL136164.4-201ENST00000625013 2135 ntBASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SMC1BQ8NDV3 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 RNA5SP42-201ENST00000364278 115 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 Y_RNA.395-201ENST00000383945 109 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 RNU6-1040P-201ENST00000383974 107 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 Y_RNA.404-201ENST00000383978 102 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 RNU6-890P-201ENST00000384121 107 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 SNORA75.6-201ENST00000391318 127 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 Z82205.1-201ENST00000428456 297 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 AC013470.1-201ENST00000453438 462 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 AC133134.1-201ENST00000466800 359 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 AC090096.1-201ENST00000489168 390 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 RNU6-976P-201ENST00000516086 111 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 SCARNA15.1-201ENST00000516384 125 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 RN7SKP272-201ENST00000516988 232 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 MIR3171-201ENST00000584270 74 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 AC078795.3-201ENST00000602913 472 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 AC011890.2-201ENST00000613393 294 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 MIR6134-201ENST00000617606 109 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 AC092608.2-201ENST00000624427 218 ntBASIC3.78□□□□□ -1.8
SMC1BQ8NDV3 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.77□□□□□ -1.81
SMC1BQ8NDV3 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SMC1BQ8NDV3 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.77□□□□□ -1.81
SMC1BQ8NDV3 Y_RNA.202-201ENST00000364083 110 ntBASIC3.77□□□□□ -1.81
SMC1BQ8NDV3 RNU6-1317P-201ENST00000364582 104 ntBASIC3.77□□□□□ -1.81
SMC1BQ8NDV3 RNU6-596P-201ENST00000365395 98 ntBASIC3.77□□□□□ -1.81
SMC1BQ8NDV3 RNU6-474P-201ENST00000384243 107 ntBASIC3.77□□□□□ -1.81
SMC1BQ8NDV3 MIR518D-201ENST00000385014 87 ntBASIC3.77□□□□□ -1.81
SMC1BQ8NDV3 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.77□□□□□ -1.81
SMC1BQ8NDV3 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.77□□□□□ -1.81
SMC1BQ8NDV3 AC125238.1-201ENST00000448842 249 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms