Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 DPH3P2-201ENST00000422618 250 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 TOMM20P4-201ENST00000427861 435 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 FTH1P25-201ENST00000447665 469 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-717P-201ENST00000459076 104 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC008549.1-201ENST00000512900 643 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 RNU1-40P-201ENST00000516816 164 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 RNU1-97P-201ENST00000516872 164 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 RN7SKP256-201ENST00000517201 314 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 MTCO2P4-201ENST00000517968 247 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC022616.3-201ENST00000523940 148 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 MIR3124-201ENST00000582636 67 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 MIR548AC-201ENST00000585049 88 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC073648.5-201ENST00000603502 305 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC109347.2-201ENST00000610220 349 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC015540.1-201ENST00000615828 501 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC136475.10-201ENST00000620253 385 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC090517.3-201ENST00000625170 141 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 MTND5P26-201ENST00000426018 1752 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-1210P-201ENST00000363775 107 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 RNY4P34-201ENST00000364779 95 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-546P-201ENST00000383991 107 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 MIR29B2-201ENST00000385055 81 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 Y_RNA.582-201ENST00000391023 95 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 SNORA3.2-201ENST00000408221 125 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 RNU2-40P-201ENST00000410833 196 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AL031779.1-201ENST00000415663 330 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AC009963.1-201ENST00000417265 157 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 RPL31P35-201ENST00000431058 377 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AL358934.1-201ENST00000432346 324 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 FARSBP1-201ENST00000435808 1778 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 MTND4P5-201ENST00000435821 1374 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AL354685.2-201ENST00000448218 1447 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 MTND1P27-201ENST00000451117 902 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AC010587.1-201ENST00000505809 469 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 RNA5SP337-201ENST00000517007 109 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AL359740.1-201ENST00000624340 592 ntBASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.04□□□□□ -2.08
ZNF540Q8NDQ6 Y_RNA.22-201ENST00000362492 102 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-942P-201ENST00000363002 107 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 SNORD56.2-201ENST00000363242 71 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-169P-201ENST00000365336 107 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 XGY1-201ENST00000381172 446 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-259P-201ENST00000383999 107 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-39P-201ENST00000384344 107 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 SNORA8-201ENST00000384574 139 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 MIR10A-201ENST00000385043 110 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 RNA5SP489-201ENST00000410986 109 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 RNU2-32P-201ENST00000411193 191 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 POLHP1-201ENST00000411806 470 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 BX295541.1-201ENST00000417774 250 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 Z98742.3-201ENST00000418637 326 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 ISCA1P6-201ENST00000427740 390 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 SRIP2-201ENST00000428470 166 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AC119618.1-201ENST00000434191 222 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AC108078.1-201ENST00000508073 725 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 MIR4648-201ENST00000580107 72 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AL139286.2-201ENST00000606838 396 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AC098657.3-201ENST00000620434 263 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 U1.36-201ENST00000620684 176 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AC007792.1-201ENST00000623023 402 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AC093648.1-201ENST00000623546 606 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AL359757.2-201ENST00000624309 274 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 AC110994.2-201ENST00000635481 492 ntBASIC2.03□□□□□ -2.08
ZNF540Q8NDQ6 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.03□□□□□ -2.09
ZNF540Q8NDQ6 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 Y_RNA.159-201ENST00000363674 87 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 RNA5SP138-201ENST00000365098 114 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 SNORA75B-201ENST00000384053 137 ntBASIC2.02□□□□□ -2.09
ZNF540Q8NDQ6 RNU6-622P-201ENST00000384272 103 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms