Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 Z98742.3-201ENST00000418637 326 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 AL139413.1-201ENST00000421309 217 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 RPS3AP44-201ENST00000425466 790 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 AC006026.2-201ENST00000457376 180 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 RNU6-717P-201ENST00000459076 104 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 AC105417.1-201ENST00000514691 285 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 RNA5SP200-201ENST00000516360 103 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 RNA5SP364-201ENST00000516938 78 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 CBX3P7-201ENST00000532876 502 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 CR383656.8-201ENST00000549046 145 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 AGGF1P4-201ENST00000568249 801 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 MIR4435-1-201ENST00000582552 80 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 AC073410.2-201ENST00000603240 332 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 AC097065.2-201ENST00000608159 533 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 Z99129.1-201ENST00000612510 255 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 Z69720.2-201ENST00000624755 279 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.92□□□□□ -2.1
SKA3Q8IX90 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
SKA3Q8IX90 CENPCP1-201ENST00000533085 2578 ntBASIC1.92□□□□□ -2.1
SKA3Q8IX90 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.91□□□□□ -2.1
SKA3Q8IX90 HAUS6P2-201ENST00000433254 2404 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
SKA3Q8IX90 SNORD114-19-201ENST00000363072 75 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 RNU4-24P-201ENST00000364565 139 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 SNORA16B-201ENST00000364674 135 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 RNU6-259P-201ENST00000383999 107 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 RNU6-622P-201ENST00000384272 103 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 RNU6-434P-201ENST00000384376 107 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 RNU6-1158P-201ENST00000391167 107 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AC003685.2-201ENST00000422795 395 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 EIF4EP4-201ENST00000424916 578 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 GPM6BP3-201ENST00000442797 145 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AC073415.1-201ENST00000449240 153 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.91□□□□□ -2.1
SKA3Q8IX90 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC1.91□□□□□ -2.1
SKA3Q8IX90 AL122001.1-201ENST00000457027 370 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AP001025.1-201ENST00000486139 332 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AC008526.1-201ENST00000509149 338 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 RPL23AP94-201ENST00000512518 302 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 LRRC34P2-201ENST00000514850 553 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 SNORA31.23-201ENST00000517219 133 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.91□□□□□ -2.1
SKA3Q8IX90 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.91□□□□□ -2.1
SKA3Q8IX90 AC024909.2-201ENST00000553035 286 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 ANP32BP3-201ENST00000559213 706 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.91□□□□□ -2.1
SKA3Q8IX90 AC012507.3-201ENST00000603556 477 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AC103591.3-201ENST00000608684 209 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AC104073.3-201ENST00000610942 955 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AC064859.1-201ENST00000624741 174 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AP003400.5-201ENST00000624827 617 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.91□□□□□ -2.1
SKA3Q8IX90 OR5AK4P-201ENST00000635912 903 ntBASIC1.91□□□□□ -2.1
SKA3Q8IX90 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.1
SKA3Q8IX90 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.9□□□□□ -2.11
SKA3Q8IX90 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.9□□□□□ -2.11
SKA3Q8IX90 MTND4P14-201ENST00000435799 1354 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SKA3Q8IX90 SNORD56.1-201ENST00000362913 68 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 RNU6-266P-201ENST00000364225 107 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 SNORA3.2-201ENST00000408221 125 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AL356320.1-201ENST00000429616 163 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AL606489.2-201ENST00000433886 234 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.9□□□□□ -2.11
SKA3Q8IX90 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.9□□□□□ -2.11
SKA3Q8IX90 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.9□□□□□ -2.11
SKA3Q8IX90 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 SNORA40.12-201ENST00000516329 111 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AP005902.1-201ENST00000521358 186 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AL137161.1-201ENST00000532231 390 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AC026464.5-201ENST00000562497 722 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AC090897.2-201ENST00000581715 130 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AL138963.2-201ENST00000605137 226 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AC123912.5-201ENST00000605470 343 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AC002044.1-201ENST00000606707 158 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AC009233.1-201ENST00000616477 371 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AL354950.2-201ENST00000617939 290 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 RMST_7.1-201ENST00000621935 268 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 MIR6132-201ENST00000622083 109 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 MIR6873-201ENST00000622788 63 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 AC139792.3-201ENST00000623525 224 ntBASIC1.9□□□□□ -2.11
SKA3Q8IX90 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
SKA3Q8IX90 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
SKA3Q8IX90 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SKA3Q8IX90 RNU6-212P-201ENST00000362642 104 ntBASIC1.89□□□□□ -2.11
SKA3Q8IX90 RNU6-37P-201ENST00000362692 107 ntBASIC1.89□□□□□ -2.11
SKA3Q8IX90 RNU6-1010P-201ENST00000362757 107 ntBASIC1.89□□□□□ -2.11
SKA3Q8IX90 Y_RNA.194-201ENST00000363985 102 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 242.9 ms