Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC099654.14-201ENST00000638599 341 ntBASIC2.8□□□□□ -1.96
USP41Q3LFD5 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
USP41Q3LFD5 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
USP41Q3LFD5 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.79□□□□□ -1.96
USP41Q3LFD5 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
USP41Q3LFD5 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.79□□□□□ -1.96
USP41Q3LFD5 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
USP41Q3LFD5 SNORA67.4-201ENST00000384688 142 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 MIR450B-201ENST00000401182 78 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 RNU6-1148P-201ENST00000410992 104 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.79□□□□□ -1.96
USP41Q3LFD5 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 USP9YP20-201ENST00000419224 558 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 PTGES3P4-201ENST00000426243 356 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 AL031274.1-201ENST00000450334 232 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 AP000705.1-201ENST00000454567 350 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 RNU7-138P-201ENST00000459479 64 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 AC008571.1-201ENST00000467232 300 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 RPL23AP45-201ENST00000476406 468 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 GZMAP1-201ENST00000503054 631 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.79□□□□□ -1.96
USP41Q3LFD5 SNORD19.2-201ENST00000516978 73 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 MIR4635-201ENST00000583759 79 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.79□□□□□ -1.96
USP41Q3LFD5 AL590808.1-201ENST00000618696 141 ntBASIC2.79□□□□□ -1.96
USP41Q3LFD5 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
USP41Q3LFD5 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
USP41Q3LFD5 RNU6-78P-201ENST00000362897 107 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 RNU6-942P-201ENST00000363002 107 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 XGY1-201ENST00000381172 446 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 SNORD21-201ENST00000383953 95 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 MIR592-201ENST00000384959 97 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 MIR147B-201ENST00000390185 80 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 FGF7P8-201ENST00000402994 292 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.78□□□□□ -1.96
USP41Q3LFD5 SNORD56-201ENST00000413522 71 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AL096701.2-201ENST00000416920 238 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AL513185.2-201ENST00000425543 193 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AL358075.3-201ENST00000426289 226 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.78□□□□□ -1.96
USP41Q3LFD5 NDUFA5P4-201ENST00000436704 385 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC012308.1-201ENST00000451232 178 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC006026.2-201ENST00000457376 180 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 TRBV12-1-201ENST00000479785 344 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC103975.1-201ENST00000482506 483 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.78□□□□□ -1.96
USP41Q3LFD5 SNORA43.2-201ENST00000516652 128 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC087854.1-201ENST00000519706 414 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC107953.1-201ENST00000522216 297 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.78□□□□□ -1.96
USP41Q3LFD5 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC011712.1-201ENST00000588959 234 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC010620.2-201ENST00000600135 313 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.78□□□□□ -1.96
USP41Q3LFD5 RMST_7.1-201ENST00000621935 268 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 AC010297.1-201ENST00000623948 149 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 CTSLP2-204ENST00000629029 392 ntBASIC2.78□□□□□ -1.96
USP41Q3LFD5 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
USP41Q3LFD5 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
USP41Q3LFD5 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
USP41Q3LFD5 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
USP41Q3LFD5 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
USP41Q3LFD5 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 AC138915.1-201ENST00000565427 1685 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 RNU6-254P-201ENST00000363377 107 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 SNORD113-7-201ENST00000363762 77 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 Y_RNA.414-201ENST00000384011 101 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 SNORD73A-201ENST00000386062 65 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 RPL19P1-201ENST00000411635 428 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 RPL7P37-201ENST00000425095 738 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 AL365400.1-201ENST00000431854 640 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 MTCO3P18-201ENST00000440206 761 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 AC107626.1-201ENST00000471084 183 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 AP000852.1-201ENST00000472460 573 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 RPL31P41-201ENST00000477967 372 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 AC008628.2-201ENST00000502605 298 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 AC008413.1-201ENST00000511864 177 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 RNU6-1332P-201ENST00000516666 104 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 AL391813.1-201ENST00000603098 260 ntBASIC2.77□□□□□ -1.97
USP41Q3LFD5 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
USP41Q3LFD5 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
USP41Q3LFD5 Y_RNA.72-201ENST00000362894 103 ntBASIC2.76□□□□□ -1.97
USP41Q3LFD5 SNORD116-20-201ENST00000384529 92 ntBASIC2.76□□□□□ -1.97
USP41Q3LFD5 RNU6-831P-201ENST00000384548 107 ntBASIC2.76□□□□□ -1.97
USP41Q3LFD5 MIR27B-201ENST00000385129 97 ntBASIC2.76□□□□□ -1.97
USP41Q3LFD5 RPL7P12-201ENST00000446719 750 ntBASIC2.76□□□□□ -1.97
USP41Q3LFD5 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
USP41Q3LFD5 AL441985.1-201ENST00000457727 251 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms