Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-227P-201ENST00000362865 103 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-490P-201ENST00000362985 107 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-527P-201ENST00000363425 104 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 Y_RNA.422-201ENST00000384054 114 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 SNORA48.2-201ENST00000390926 124 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 RNA5SP252-201ENST00000391131 119 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 SNORA48.8-201ENST00000391324 134 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 FTH1P15-201ENST00000406984 280 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 RNA5SP293-201ENST00000410527 113 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AP000275.1-201ENST00000411943 390 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AC023141.4-201ENST00000412031 328 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AC074117.2-201ENST00000417130 397 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AC006028.1-201ENST00000438379 402 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 RPS29P27-201ENST00000463711 170 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 MRPL42P6-201ENST00000486397 371 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 RPL23AP49-201ENST00000492925 468 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 PHBP14-201ENST00000512887 367 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 RNA5SP384-201ENST00000516615 116 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 SNORA64.4-201ENST00000516632 81 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 SNORA31.18-201ENST00000517043 134 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AC009163.5-201ENST00000575421 637 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 AC073657.2-201ENST00000605661 303 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 MIR3976-201ENST00000606807 139 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 MIR8057-201ENST00000620957 69 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 MIR3529-201ENST00000637713 78 ntBASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.15□□□□□ -1.91
PTCHD3Q3KNS1 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-1115P-201ENST00000362490 106 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 RNA5SP374-201ENST00000362939 125 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 Y_RNA.252-201ENST00000364556 101 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-331P-201ENST00000384724 107 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 AC018865.2-201ENST00000423631 129 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 AL365496.1-201ENST00000426885 215 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 RPS15AP5-201ENST00000436276 388 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 RPS27P29-201ENST00000463110 252 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 SCARNA16.2-201ENST00000516520 172 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 Y_RNA.711-201ENST00000516993 102 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-264P-201ENST00000517134 104 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 SNORA31.21-201ENST00000517180 77 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 SUB1P3-201ENST00000564581 315 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 MTCO3P13-201ENST00000577757 781 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 AC020895.1-201ENST00000595362 272 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 AC091903.1-201ENST00000624322 454 ntBASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.14□□□□□ -1.91
PTCHD3Q3KNS1 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 SNORD56.3-201ENST00000363507 71 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-487P-201ENST00000365430 104 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 Y_RNA.463-201ENST00000384271 102 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-843P-201ENST00000384454 104 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 SNORD116-20-201ENST00000384529 92 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 MIR521-1-201ENST00000384902 87 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-1245P-201ENST00000411130 106 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AC096649.2-201ENST00000416186 393 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AL161651.1-201ENST00000440882 223 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AL163540.1-201ENST00000485382 386 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AC068781.1-201ENST00000488231 618 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AC097462.2-201ENST00000504623 481 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AC110794.1-201ENST00000505816 425 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 MTND4LP22-201ENST00000508209 276 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 RNU6-581P-201ENST00000516214 105 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 RNU1-143P-201ENST00000516296 146 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AC023442.1-201ENST00000531247 422 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 MIR5696-201ENST00000578474 85 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AP001836.1-201ENST00000604675 523 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 U1.23-201ENST00000610293 146 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 RNU1-68P-201ENST00000615382 146 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AC024581.2-201ENST00000619986 252 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 U1.39-201ENST00000621562 146 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 MTND5P30-201ENST00000452896 1731 ntBASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.13□□□□□ -1.91
PTCHD3Q3KNS1 AC004944.1-201ENST00000517807 3059 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 174.9 ms