Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
SOX4Q06945 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SOX4Q06945 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SOX4Q06945 RBBP8P1-201ENST00000449447 1844 ntBASIC4.16□□□□□ -1.74
SOX4Q06945 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SOX4Q06945 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.16□□□□□ -1.74
SOX4Q06945 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SOX4Q06945 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
SOX4Q06945 RNU6-1290P-201ENST00000362957 109 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 RNU5B-2P-201ENST00000363036 113 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 SNORA62.3-201ENST00000365110 153 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 RNA5SP171-201ENST00000391071 115 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 RNU6-159P-201ENST00000391080 106 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 PTMAP2-201ENST00000397627 327 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 Y_RNA.597-201ENST00000410463 100 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 AC069285.2-201ENST00000440210 275 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.15□□□□□ -1.75
SOX4Q06945 AC009237.8-201ENST00000445492 379 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 snoU13.4-201ENST00000458916 104 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 AL049830.2-201ENST00000480072 201 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 VWA8P1-201ENST00000510889 176 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 SNORA40.9-201ENST00000515895 93 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 SNORA31.8-201ENST00000516327 108 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 RNU6-58P-201ENST00000517143 103 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.15□□□□□ -1.75
SOX4Q06945 AC022695.1-201ENST00000522089 237 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 AP005660.1-201ENST00000522972 293 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 ZNF192P1-203ENST00000565888 810 ntBASIC4.15□□□□□ -1.75
SOX4Q06945 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.15□□□□□ -1.75
SOX4Q06945 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
SOX4Q06945 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
SOX4Q06945 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SOX4Q06945 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.15□□□□□ -1.75
SOX4Q06945 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.14□□□□□ -1.75
SOX4Q06945 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.14□□□□□ -1.75
SOX4Q06945 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 RNA5SP502-201ENST00000362694 119 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 Y_RNA.81-201ENST00000362997 102 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 RNU6-942P-201ENST00000363002 107 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 RNU6-137P-201ENST00000363680 108 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 Y_RNA.262-201ENST00000364641 102 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 SNORD32A-201ENST00000364805 84 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 RNU6-22P-201ENST00000384355 107 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 MIR513A2-201ENST00000385249 127 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 RPL23AP48-201ENST00000406913 488 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 MTHFD2P2-201ENST00000407725 247 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 RNA5SP239-201ENST00000410218 129 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 SNORA57.3-201ENST00000411095 141 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 OOSP1P1-201ENST00000423265 274 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 AC024067.1-201ENST00000426199 223 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 Z82210.1-201ENST00000440037 231 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 AC009237.7-201ENST00000447357 229 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.14□□□□□ -1.75
SOX4Q06945 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.14□□□□□ -1.75
SOX4Q06945 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC4.14□□□□□ -1.75
SOX4Q06945 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.14□□□□□ -1.75
SOX4Q06945 AC074050.1-201ENST00000563247 211 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 MIR92B-201ENST00000607575 96 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 AC015813.4-201ENST00000610469 179 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 AC024581.2-201ENST00000619986 252 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 SNORA43.4-201ENST00000629559 138 ntBASIC4.14□□□□□ -1.75
SOX4Q06945 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.14□□□□□ -1.75
SOX4Q06945 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
SOX4Q06945 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.14□□□□□ -1.75
SOX4Q06945 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SOX4Q06945 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SOX4Q06945 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.13□□□□□ -1.75
SOX4Q06945 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
SOX4Q06945 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
SOX4Q06945 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
SOX4Q06945 Y_RNA.217-201ENST00000364214 105 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 RNU6-898P-201ENST00000365627 104 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 MIR487A-201ENST00000385009 80 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 MIR518D-201ENST00000385014 87 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SOX4Q06945 RPL23AP95-201ENST00000426806 265 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 AL591419.1-201ENST00000427423 339 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 Y_RNA.641-201ENST00000459414 105 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 AL133162.1-201ENST00000463228 453 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 RNU6-62P-201ENST00000516526 102 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 RNA5SP143-201ENST00000516936 115 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 AC016256.1-201ENST00000547971 354 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.13□□□□□ -1.75
SOX4Q06945 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.13□□□□□ -1.75
SOX4Q06945 AC005176.2-201ENST00000596933 147 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 AC244505.7-201ENST00000599675 272 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 AC084757.4-201ENST00000616350 526 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 AL591424.2-201ENST00000617023 128 ntBASIC4.13□□□□□ -1.75
SOX4Q06945 AC091953.5-201ENST00000622919 233 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms