Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH2P43246 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH2P43246 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.69□□□□□ -1.98
MSH2P43246 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.69□□□□□ -1.98
MSH2P43246 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSH2P43246 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.69□□□□□ -1.98
MSH2P43246 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.68□□□□□ -1.98
MSH2P43246 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
MSH2P43246 RNU6-78P-201ENST00000362897 107 ntBASIC2.68□□□□□ -1.98
MSH2P43246 RNA5SP393-201ENST00000363423 117 ntBASIC2.68□□□□□ -1.98
MSH2P43246 RNA5SP125-201ENST00000364843 120 ntBASIC2.68□□□□□ -1.98
MSH2P43246 EIF4E2P1-201ENST00000393781 255 ntBASIC2.68□□□□□ -1.98
MSH2P43246 SNORD56-201ENST00000413522 71 ntBASIC2.68□□□□□ -1.98
MSH2P43246 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.68□□□□□ -1.98
MSH2P43246 COTL1P1-201ENST00000422309 375 ntBASIC2.68□□□□□ -1.98
MSH2P43246 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.68□□□□□ -1.98
MSH2P43246 AC236972.1-201ENST00000433225 199 ntBASIC2.68□□□□□ -1.98
MSH2P43246 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.68□□□□□ -1.98
MSH2P43246 RPL23AP45-201ENST00000476406 468 ntBASIC2.68□□□□□ -1.98
MSH2P43246 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.68□□□□□ -1.98
MSH2P43246 AC069439.1-201ENST00000494739 167 ntBASIC2.68□□□□□ -1.98
MSH2P43246 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.68□□□□□ -1.98
MSH2P43246 SMURF2P1-201ENST00000514992 481 ntBASIC2.68□□□□□ -1.98
MSH2P43246 RNU6-1069P-201ENST00000516612 133 ntBASIC2.68□□□□□ -1.98
MSH2P43246 RPL7P20-201ENST00000520308 745 ntBASIC2.68□□□□□ -1.98
MSH2P43246 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.68□□□□□ -1.98
MSH2P43246 AL121757.2-201ENST00000611223 313 ntBASIC2.68□□□□□ -1.98
MSH2P43246 AC138627.2-201ENST00000624202 601 ntBASIC2.68□□□□□ -1.98
MSH2P43246 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.68□□□□□ -1.98
MSH2P43246 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
MSH2P43246 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
MSH2P43246 Y_RNA.373-201ENST00000365600 103 ntBASIC2.67□□□□□ -1.98
MSH2P43246 SNORA18.3-201ENST00000384122 132 ntBASIC2.67□□□□□ -1.98
MSH2P43246 AL138827.1-201ENST00000402666 306 ntBASIC2.67□□□□□ -1.98
MSH2P43246 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.67□□□□□ -1.98
MSH2P43246 AC097463.2-201ENST00000421074 142 ntBASIC2.67□□□□□ -1.98
MSH2P43246 AL365400.1-201ENST00000431854 640 ntBASIC2.67□□□□□ -1.98
MSH2P43246 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.67□□□□□ -1.98
MSH2P43246 AC112771.1-201ENST00000463581 102 ntBASIC2.67□□□□□ -1.98
MSH2P43246 AC133134.1-201ENST00000466800 359 ntBASIC2.67□□□□□ -1.98
MSH2P43246 AP000852.1-201ENST00000472460 573 ntBASIC2.67□□□□□ -1.98
MSH2P43246 MTCYBP40-201ENST00000509390 1135 ntBASIC2.67□□□□□ -1.98
MSH2P43246 SNORA19.2-201ENST00000516013 114 ntBASIC2.67□□□□□ -1.98
MSH2P43246 MIR5692C1-201ENST00000585309 91 ntBASIC2.67□□□□□ -1.98
MSH2P43246 RNU6-85P-201ENST00000605989 107 ntBASIC2.67□□□□□ -1.98
MSH2P43246 AL137847.3-201ENST00000611521 109 ntBASIC2.67□□□□□ -1.98
MSH2P43246 AC006386.2-201ENST00000624491 75 ntBASIC2.67□□□□□ -1.98
MSH2P43246 AC012005.1-201ENST00000624575 75 ntBASIC2.67□□□□□ -1.98
MSH2P43246 U4.7-201ENST00000638126 106 ntBASIC2.67□□□□□ -1.98
MSH2P43246 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
MSH2P43246 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
MSH2P43246 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.66□□□□□ -1.98
MSH2P43246 AC138393.1-203ENST00000327086 343 ntBASIC2.66□□□□□ -1.98
MSH2P43246 Y_RNA.157-201ENST00000363638 102 ntBASIC2.66□□□□□ -1.98
MSH2P43246 RNU6-843P-201ENST00000384454 104 ntBASIC2.66□□□□□ -1.98
MSH2P43246 SNORD116-20-201ENST00000384529 92 ntBASIC2.66□□□□□ -1.98
MSH2P43246 NDUFB4P4-201ENST00000404822 243 ntBASIC2.66□□□□□ -1.98
MSH2P43246 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.66□□□□□ -1.98
MSH2P43246 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.66□□□□□ -1.98
MSH2P43246 SUMO1P4-201ENST00000429430 302 ntBASIC2.66□□□□□ -1.98
MSH2P43246 MTND1P2-201ENST00000430604 821 ntBASIC2.66□□□□□ -1.98
MSH2P43246 RPL7P12-201ENST00000446719 750 ntBASIC2.66□□□□□ -1.98
MSH2P43246 RNU7-138P-201ENST00000459479 64 ntBASIC2.66□□□□□ -1.98
MSH2P43246 RNU5B-3P-201ENST00000516601 115 ntBASIC2.66□□□□□ -1.98
MSH2P43246 AL133241.1-201ENST00000556832 487 ntBASIC2.66□□□□□ -1.98
MSH2P43246 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.66□□□□□ -1.98
MSH2P43246 LARP7P3-201ENST00000579888 337 ntBASIC2.66□□□□□ -1.98
MSH2P43246 RPL12P50-201ENST00000603116 116 ntBASIC2.66□□□□□ -1.98
MSH2P43246 AL357078.3-201ENST00000607528 618 ntBASIC2.66□□□□□ -1.98
MSH2P43246 AC006504.8-201ENST00000621046 635 ntBASIC2.66□□□□□ -1.98
MSH2P43246 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.66□□□□□ -1.98
MSH2P43246 AC090617.10-201ENST00000624308 134 ntBASIC2.66□□□□□ -1.98
MSH2P43246 MIR3529-201ENST00000637713 78 ntBASIC2.66□□□□□ -1.98
MSH2P43246 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.66□□□□□ -1.98
MSH2P43246 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.65□□□□□ -1.98
MSH2P43246 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.65□□□□□ -1.98
MSH2P43246 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.65□□□□□ -1.99
MSH2P43246 MIR23A-201ENST00000385245 73 ntBASIC2.65□□□□□ -1.99
MSH2P43246 AC007064.1-201ENST00000412238 351 ntBASIC2.65□□□□□ -1.99
MSH2P43246 USP9YP20-201ENST00000419224 558 ntBASIC2.65□□□□□ -1.99
MSH2P43246 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.65□□□□□ -1.99
MSH2P43246 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.65□□□□□ -1.99
MSH2P43246 AC007547.1-201ENST00000462177 490 ntBASIC2.65□□□□□ -1.99
MSH2P43246 RPL7P43-201ENST00000478876 753 ntBASIC2.65□□□□□ -1.99
MSH2P43246 FAM206BP-201ENST00000510179 541 ntBASIC2.65□□□□□ -1.99
MSH2P43246 AF213884.2-201ENST00000510417 903 ntBASIC2.65□□□□□ -1.99
MSH2P43246 RNU6-358P-201ENST00000516564 75 ntBASIC2.65□□□□□ -1.99
MSH2P43246 RNU1-104P-201ENST00000517280 175 ntBASIC2.65□□□□□ -1.99
MSH2P43246 AC109479.2-201ENST00000517842 174 ntBASIC2.65□□□□□ -1.99
MSH2P43246 AC087854.1-201ENST00000519706 414 ntBASIC2.65□□□□□ -1.99
MSH2P43246 AP005902.1-201ENST00000521358 186 ntBASIC2.65□□□□□ -1.99
MSH2P43246 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.65□□□□□ -1.99
MSH2P43246 AP000763.2-201ENST00000540641 163 ntBASIC2.65□□□□□ -1.99
MSH2P43246 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.65□□□□□ -1.99
MSH2P43246 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.65□□□□□ -1.99
MSH2P43246 CTHRC1P1-201ENST00000605383 469 ntBASIC2.65□□□□□ -1.99
MSH2P43246 RNU6-91P-201ENST00000607774 107 ntBASIC2.65□□□□□ -1.99
MSH2P43246 AC244517.12-201ENST00000623581 663 ntBASIC2.65□□□□□ -1.99
MSH2P43246 FO624990.1-201ENST00000636373 85 ntBASIC2.65□□□□□ -1.99
MSH2P43246 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 152 ms