Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.35□□□□□ -2.03
SOX3P41225 AC004383.1-201ENST00000438135 289 ntBASIC2.35□□□□□ -2.03
SOX3P41225 MTCO3P18-201ENST00000440206 761 ntBASIC2.35□□□□□ -2.03
SOX3P41225 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.35□□□□□ -2.03
SOX3P41225 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.35□□□□□ -2.03
SOX3P41225 RNU7-138P-201ENST00000459479 64 ntBASIC2.35□□□□□ -2.03
SOX3P41225 RPL31P58-201ENST00000469001 379 ntBASIC2.35□□□□□ -2.03
SOX3P41225 AP000852.1-201ENST00000472460 573 ntBASIC2.35□□□□□ -2.03
SOX3P41225 RPL23AP45-201ENST00000476406 468 ntBASIC2.35□□□□□ -2.03
SOX3P41225 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.35□□□□□ -2.03
SOX3P41225 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.35□□□□□ -2.03
SOX3P41225 MTCYBP40-201ENST00000509390 1135 ntBASIC2.35□□□□□ -2.03
SOX3P41225 RNA5SP320-201ENST00000516263 124 ntBASIC2.35□□□□□ -2.03
SOX3P41225 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SOX3P41225 AC087854.1-201ENST00000519706 414 ntBASIC2.35□□□□□ -2.03
SOX3P41225 GLYCAM1-201ENST00000546596 285 ntBASIC2.35□□□□□ -2.03
SOX3P41225 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.35□□□□□ -2.03
SOX3P41225 AC009163.5-201ENST00000575421 637 ntBASIC2.35□□□□□ -2.03
SOX3P41225 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.35□□□□□ -2.03
SOX3P41225 MIR5692C1-201ENST00000585309 91 ntBASIC2.35□□□□□ -2.03
SOX3P41225 AC060780.3-201ENST00000589464 80 ntBASIC2.35□□□□□ -2.03
SOX3P41225 RPL23AP78-201ENST00000599928 470 ntBASIC2.35□□□□□ -2.03
SOX3P41225 AL121757.2-201ENST00000611223 313 ntBASIC2.35□□□□□ -2.03
SOX3P41225 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.35□□□□□ -2.03
SOX3P41225 AC090617.10-201ENST00000624308 134 ntBASIC2.35□□□□□ -2.03
SOX3P41225 AC243829.7-201ENST00000633081 225 ntBASIC2.35□□□□□ -2.03
SOX3P41225 AC100810.6-201ENST00000638068 285 ntBASIC2.35□□□□□ -2.03
SOX3P41225 U4.7-201ENST00000638126 106 ntBASIC2.35□□□□□ -2.03
SOX3P41225 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.35□□□□□ -2.03
SOX3P41225 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.35□□□□□ -2.03
SOX3P41225 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.35□□□□□ -2.03
SOX3P41225 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
SOX3P41225 ZNF271P-202ENST00000465539 1970 ntBASIC2.34□□□□□ -2.03
SOX3P41225 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.34□□□□□ -2.03
SOX3P41225 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
SOX3P41225 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
SOX3P41225 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.34□□□□□ -2.03
SOX3P41225 RNU4-82P-201ENST00000362443 140 ntBASIC2.34□□□□□ -2.03
SOX3P41225 RNU6-254P-201ENST00000363377 107 ntBASIC2.34□□□□□ -2.03
SOX3P41225 RNU5E-7P-201ENST00000365290 117 ntBASIC2.34□□□□□ -2.03
SOX3P41225 FO393413.1-201ENST00000402892 195 ntBASIC2.34□□□□□ -2.03
SOX3P41225 AL162578.1-201ENST00000406202 378 ntBASIC2.34□□□□□ -2.03
SOX3P41225 RPL7P37-201ENST00000425095 738 ntBASIC2.34□□□□□ -2.03
SOX3P41225 HMGB1P31-201ENST00000437242 427 ntBASIC2.34□□□□□ -2.03
SOX3P41225 AC107626.1-201ENST00000471084 183 ntBASIC2.34□□□□□ -2.03
SOX3P41225 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.34□□□□□ -2.03
SOX3P41225 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.34□□□□□ -2.03
SOX3P41225 GZMAP1-201ENST00000503054 631 ntBASIC2.34□□□□□ -2.03
SOX3P41225 SEM1P1-201ENST00000506694 209 ntBASIC2.34□□□□□ -2.03
SOX3P41225 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.34□□□□□ -2.03
SOX3P41225 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.34□□□□□ -2.03
SOX3P41225 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.34□□□□□ -2.03
SOX3P41225 RN7SKP24-201ENST00000515888 284 ntBASIC2.34□□□□□ -2.03
SOX3P41225 SNORA19.2-201ENST00000516013 114 ntBASIC2.34□□□□□ -2.03
SOX3P41225 RNU5B-3P-201ENST00000516601 115 ntBASIC2.34□□□□□ -2.03
SOX3P41225 AC109479.2-201ENST00000517842 174 ntBASIC2.34□□□□□ -2.03
SOX3P41225 BTF3P12-201ENST00000519620 469 ntBASIC2.34□□□□□ -2.03
SOX3P41225 CKS1BP7-201ENST00000522230 235 ntBASIC2.34□□□□□ -2.03
SOX3P41225 COPS8P3-201ENST00000526024 482 ntBASIC2.34□□□□□ -2.03
SOX3P41225 AL133241.1-201ENST00000556832 487 ntBASIC2.34□□□□□ -2.03
SOX3P41225 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.34□□□□□ -2.03
SOX3P41225 MIR4801-201ENST00000582704 82 ntBASIC2.34□□□□□ -2.03
SOX3P41225 AC018638.8-201ENST00000588755 281 ntBASIC2.34□□□□□ -2.03
SOX3P41225 AC010620.2-201ENST00000600135 313 ntBASIC2.34□□□□□ -2.03
SOX3P41225 AL670379.10-201ENST00000604330 253 ntBASIC2.34□□□□□ -2.03
SOX3P41225 CTHRC1P1-201ENST00000605383 469 ntBASIC2.34□□□□□ -2.03
SOX3P41225 AL670379.9-201ENST00000605428 253 ntBASIC2.34□□□□□ -2.03
SOX3P41225 RNU6-85P-201ENST00000605989 107 ntBASIC2.34□□□□□ -2.03
SOX3P41225 AC104237.2-201ENST00000612456 443 ntBASIC2.34□□□□□ -2.03
SOX3P41225 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.04
SOX3P41225 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
SOX3P41225 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
SOX3P41225 AC138393.1-203ENST00000327086 343 ntBASIC2.33□□□□□ -2.04
SOX3P41225 RNU6-78P-201ENST00000362897 107 ntBASIC2.33□□□□□ -2.04
SOX3P41225 Y_RNA.86-201ENST00000363020 111 ntBASIC2.33□□□□□ -2.04
SOX3P41225 SNORD113-7-201ENST00000363762 77 ntBASIC2.33□□□□□ -2.04
SOX3P41225 RNU6-843P-201ENST00000384454 104 ntBASIC2.33□□□□□ -2.04
SOX3P41225 MIR27B-201ENST00000385129 97 ntBASIC2.33□□□□□ -2.04
SOX3P41225 AL513477.1-202ENST00000417061 214 ntBASIC2.33□□□□□ -2.04
SOX3P41225 AC009161.1-201ENST00000417306 376 ntBASIC2.33□□□□□ -2.04
SOX3P41225 AL139413.1-201ENST00000421309 217 ntBASIC2.33□□□□□ -2.04
SOX3P41225 AL513185.2-201ENST00000425543 193 ntBASIC2.33□□□□□ -2.04
SOX3P41225 AC013470.1-201ENST00000453438 462 ntBASIC2.33□□□□□ -2.04
SOX3P41225 RNU7-66P-201ENST00000459469 62 ntBASIC2.33□□□□□ -2.04
SOX3P41225 PRDX4P1-201ENST00000507189 574 ntBASIC2.33□□□□□ -2.04
SOX3P41225 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.33□□□□□ -2.04
SOX3P41225 RNU5F-8P-201ENST00000515941 111 ntBASIC2.33□□□□□ -2.04
SOX3P41225 SNORA31.15-201ENST00000516771 132 ntBASIC2.33□□□□□ -2.04
SOX3P41225 RNU6-1314P-201ENST00000517139 104 ntBASIC2.33□□□□□ -2.04
SOX3P41225 RNA5SP402-201ENST00000517148 110 ntBASIC2.33□□□□□ -2.04
SOX3P41225 SCARNA11.3-201ENST00000517276 130 ntBASIC2.33□□□□□ -2.04
SOX3P41225 AC027176.1-201ENST00000560204 514 ntBASIC2.33□□□□□ -2.04
SOX3P41225 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.33□□□□□ -2.04
SOX3P41225 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.33□□□□□ -2.04
SOX3P41225 OR1M4P-201ENST00000589199 287 ntBASIC2.33□□□□□ -2.04
SOX3P41225 BNIP3P10-201ENST00000605360 577 ntBASIC2.33□□□□□ -2.04
SOX3P41225 AL357078.3-201ENST00000607528 618 ntBASIC2.33□□□□□ -2.04
SOX3P41225 uc_338.14-201ENST00000613162 166 ntBASIC2.33□□□□□ -2.04
SOX3P41225 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.33□□□□□ -2.04
SOX3P41225 AC138627.2-201ENST00000624202 601 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 126.2 ms