Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.28□□□□□ -2.2
COL18A1P39060 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
COL18A1P39060 RNU6-858P-201ENST00000362436 107 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 SNORA25B-201ENST00000365507 128 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 SMIM11P1-201ENST00000369586 178 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 RNU6-166P-201ENST00000384371 107 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 AL133475.1-201ENST00000404414 305 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 SNORD56-201ENST00000413522 71 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 PGBD4P6-201ENST00000421501 610 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 AC092648.1-201ENST00000425870 423 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC1.28□□□□□ -2.2
COL18A1P39060 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.28□□□□□ -2.2
COL18A1P39060 AC015922.2-201ENST00000435593 184 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.28□□□□□ -2.2
COL18A1P39060 snoU109.1-201ENST00000459339 135 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 AC011005.2-201ENST00000487324 359 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.28□□□□□ -2.2
COL18A1P39060 Y_RNA.689-201ENST00000516589 107 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 SNORA48.11-201ENST00000517015 89 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.28□□□□□ -2.2
COL18A1P39060 RPL30P11-203ENST00000598995 310 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 AC121334.2-201ENST00000605387 271 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 U6.42-201ENST00000618440 107 ntBASIC1.28□□□□□ -2.2
COL18A1P39060 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.28□□□□□ -2.2
COL18A1P39060 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.27□□□□□ -2.21
COL18A1P39060 RNU6-433P-201ENST00000363216 104 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 Y_RNA.534-201ENST00000384599 112 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 RNU11-5P-201ENST00000391216 129 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 AC096920.1-201ENST00000423991 241 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.27□□□□□ -2.21
COL18A1P39060 AC109927.2-201ENST00000506416 303 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC1.27□□□□□ -2.21
COL18A1P39060 RNU2-44P-201ENST00000516795 194 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 RNU6-1092P-201ENST00000516955 87 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 AC011979.2-201ENST00000527568 352 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 OR5AL2P-201ENST00000532185 920 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 AL157871.3-201ENST00000557231 293 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 MIR4307-201ENST00000582802 84 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC1.27□□□□□ -2.21
COL18A1P39060 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
COL18A1P39060 ELOCP5-201ENST00000604924 333 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 AC144521.1-201ENST00000607148 956 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 AC106052.1-201ENST00000608029 497 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 AL355816.2-201ENST00000610049 647 ntBASIC1.27□□□□□ -2.21
COL18A1P39060 MIR122-201ENST00000385044 85 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 MIR676-201ENST00000390702 67 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 RPS20P15-201ENST00000412792 311 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 AL353777.1-201ENST00000425552 326 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.26□□□□□ -2.21
COL18A1P39060 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.26□□□□□ -2.21
COL18A1P39060 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.26□□□□□ -2.21
COL18A1P39060 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.26□□□□□ -2.21
COL18A1P39060 SNORA4.4-201ENST00000515921 135 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 RNU6-586P-201ENST00000517265 104 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.26□□□□□ -2.21
COL18A1P39060 AL356432.3-201ENST00000568952 465 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC1.26□□□□□ -2.21
COL18A1P39060 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC1.26□□□□□ -2.21
COL18A1P39060 AC243960.4-201ENST00000600532 288 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 7SK.7-201ENST00000603504 247 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 AL050343.2-201ENST00000607338 280 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 MIR6857-201ENST00000613267 93 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 AC130324.3-201ENST00000614165 542 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 uc_338.15-201ENST00000615470 191 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 AC092656.1-203ENST00000624134 423 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
COL18A1P39060 Y_RNA.33-201ENST00000362591 102 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 Y_RNA.46-201ENST00000362695 102 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 RNA5SP257-201ENST00000363023 116 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 RNU6-529P-201ENST00000363383 104 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 RNU6-395P-201ENST00000365662 106 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.26□□□□□ -2.21
COL18A1P39060 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.26□□□□□ -2.21
COL18A1P39060 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC1.26□□□□□ -2.21
COL18A1P39060 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.26□□□□□ -2.21
COL18A1P39060 RPL37P21-201ENST00000435890 276 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 HAR1A.1-201ENST00000459583 118 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 RNU6-914P-201ENST00000516749 109 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 RNA5SP337-201ENST00000517007 109 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC1.26□□□□□ -2.21
COL18A1P39060 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.26□□□□□ -2.21
COL18A1P39060 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.26□□□□□ -2.21
COL18A1P39060 DEFB108E-201ENST00000524692 240 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 MTATP6P15-201ENST00000527233 835 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 IMMP1LP2-201ENST00000552954 492 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 AC136619.2-201ENST00000563361 631 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 MIR4299-201ENST00000577899 72 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 MIR15A-201ENST00000607334 83 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.26□□□□□ -2.21
COL18A1P39060 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 MIR3529-201ENST00000637713 78 ntBASIC1.26□□□□□ -2.21
COL18A1P39060 AC080100.1-201ENST00000624239 5356 ntBASIC1.25□□□□□ -2.21
COL18A1P39060 AC092104.1-201ENST00000497346 1441 ntBASIC1.25□□□□□ -2.21
COL18A1P39060 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
COL18A1P39060 RNA5SP276-201ENST00000362580 94 ntBASIC1.25□□□□□ -2.21
COL18A1P39060 RNU6-946P-201ENST00000383878 107 ntBASIC1.25□□□□□ -2.21
COL18A1P39060 RNU6-157P-201ENST00000383957 107 ntBASIC1.25□□□□□ -2.21
COL18A1P39060 SNORA70.7-201ENST00000384159 133 ntBASIC1.25□□□□□ -2.21
COL18A1P39060 MIR620-201ENST00000385232 95 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms