Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.47□□□□□ -1.85
MSX2P35548 RNU6-182P-201ENST00000516970 105 ntBASIC3.47□□□□□ -1.85
MSX2P35548 MRPL49P2-201ENST00000521066 465 ntBASIC3.47□□□□□ -1.85
MSX2P35548 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.47□□□□□ -1.85
MSX2P35548 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.47□□□□□ -1.85
MSX2P35548 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.47□□□□□ -1.85
MSX2P35548 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.47□□□□□ -1.85
MSX2P35548 MIR376A1-201ENST00000616574 68 ntBASIC3.47□□□□□ -1.85
MSX2P35548 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.47□□□□□ -1.85
MSX2P35548 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.46□□□□□ -1.85
MSX2P35548 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.46□□□□□ -1.85
MSX2P35548 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
MSX2P35548 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
MSX2P35548 LINC02555-201ENST00000563933 1951 ntBASIC3.46□□□□□ -1.86
MSX2P35548 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
MSX2P35548 SNORD81.1-201ENST00000363064 77 ntBASIC3.46□□□□□ -1.86
MSX2P35548 RNA5SP97-201ENST00000365006 84 ntBASIC3.46□□□□□ -1.86
MSX2P35548 Y_RNA.352-201ENST00000365439 102 ntBASIC3.46□□□□□ -1.86
MSX2P35548 Y_RNA.439-201ENST00000384119 94 ntBASIC3.46□□□□□ -1.86
MSX2P35548 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
MSX2P35548 AL603910.2-201ENST00000407268 136 ntBASIC3.46□□□□□ -1.86
MSX2P35548 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.46□□□□□ -1.86
MSX2P35548 AL513124.1-201ENST00000450410 614 ntBASIC3.46□□□□□ -1.86
MSX2P35548 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.46□□□□□ -1.86
MSX2P35548 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.46□□□□□ -1.86
MSX2P35548 snoU109.2-201ENST00000459316 135 ntBASIC3.46□□□□□ -1.86
MSX2P35548 AC010401.1-201ENST00000463867 348 ntBASIC3.46□□□□□ -1.86
MSX2P35548 RN7SL330P-201ENST00000469709 307 ntBASIC3.46□□□□□ -1.86
MSX2P35548 RPS23P5-201ENST00000495419 428 ntBASIC3.46□□□□□ -1.86
MSX2P35548 SNORA31.18-201ENST00000517043 134 ntBASIC3.46□□□□□ -1.86
MSX2P35548 SNORA81.3-201ENST00000517283 198 ntBASIC3.46□□□□□ -1.86
MSX2P35548 AP006245.1-201ENST00000522549 120 ntBASIC3.46□□□□□ -1.86
MSX2P35548 AP003730.1-201ENST00000524605 285 ntBASIC3.46□□□□□ -1.86
MSX2P35548 DEFB108E-201ENST00000524692 240 ntBASIC3.46□□□□□ -1.86
MSX2P35548 AC093023.1-201ENST00000547375 507 ntBASIC3.46□□□□□ -1.86
MSX2P35548 AC106785.1-201ENST00000565935 262 ntBASIC3.46□□□□□ -1.86
MSX2P35548 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.46□□□□□ -1.86
MSX2P35548 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.46□□□□□ -1.86
MSX2P35548 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.46□□□□□ -1.86
MSX2P35548 FTX_2.1-201ENST00000618816 94 ntBASIC3.46□□□□□ -1.86
MSX2P35548 AC137590.2-201ENST00000619709 240 ntBASIC3.46□□□□□ -1.86
MSX2P35548 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
MSX2P35548 AC068647.1-201ENST00000489539 2265 ntBASIC3.46□□□□□ -1.86
MSX2P35548 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.46□□□□□ -1.86
MSX2P35548 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.45□□□□□ -1.86
MSX2P35548 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
MSX2P35548 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
MSX2P35548 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.45□□□□□ -1.86
MSX2P35548 Y_RNA.274-201ENST00000364714 101 ntBASIC3.45□□□□□ -1.86
MSX2P35548 MIR23A-201ENST00000385245 73 ntBASIC3.45□□□□□ -1.86
MSX2P35548 MIR134-201ENST00000385258 73 ntBASIC3.45□□□□□ -1.86
MSX2P35548 AP000275.1-201ENST00000411943 390 ntBASIC3.45□□□□□ -1.86
MSX2P35548 TMEM167AP1-201ENST00000423409 219 ntBASIC3.45□□□□□ -1.86
MSX2P35548 Z82188.1-201ENST00000436709 154 ntBASIC3.45□□□□□ -1.86
MSX2P35548 SNRPEP9-201ENST00000436794 238 ntBASIC3.45□□□□□ -1.86
MSX2P35548 SETP5-201ENST00000437270 562 ntBASIC3.45□□□□□ -1.86
MSX2P35548 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.45□□□□□ -1.86
MSX2P35548 AC009237.8-201ENST00000445492 379 ntBASIC3.45□□□□□ -1.86
MSX2P35548 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.45□□□□□ -1.86
MSX2P35548 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.45□□□□□ -1.86
MSX2P35548 RPL23AP14-201ENST00000468281 468 ntBASIC3.45□□□□□ -1.86
MSX2P35548 ANXA2P1-201ENST00000505539 926 ntBASIC3.45□□□□□ -1.86
MSX2P35548 RNU7-175P-201ENST00000515915 61 ntBASIC3.45□□□□□ -1.86
MSX2P35548 Y_RNA.706-201ENST00000516933 99 ntBASIC3.45□□□□□ -1.86
MSX2P35548 MIR2355-201ENST00000517199 87 ntBASIC3.45□□□□□ -1.86
MSX2P35548 RNA5SP291-201ENST00000517222 105 ntBASIC3.45□□□□□ -1.86
MSX2P35548 CASP1P1-201ENST00000526345 212 ntBASIC3.45□□□□□ -1.86
MSX2P35548 AC120057.2-201ENST00000571520 271 ntBASIC3.45□□□□□ -1.86
MSX2P35548 AL445567.2-201ENST00000618935 498 ntBASIC3.45□□□□□ -1.86
MSX2P35548 AC099506.2-201ENST00000623074 221 ntBASIC3.45□□□□□ -1.86
MSX2P35548 AC027309.3-201ENST00000623419 351 ntBASIC3.45□□□□□ -1.86
MSX2P35548 AL450472.1-202ENST00000637286 180 ntBASIC3.45□□□□□ -1.86
MSX2P35548 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
MSX2P35548 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
MSX2P35548 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
MSX2P35548 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.45□□□□□ -1.86
MSX2P35548 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.44□□□□□ -1.86
MSX2P35548 AC007785.2-201ENST00000598627 1916 ntBASIC3.44□□□□□ -1.86
MSX2P35548 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSX2P35548 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.44□□□□□ -1.86
MSX2P35548 Y_RNA.16-201ENST00000362421 102 ntBASIC3.44□□□□□ -1.86
MSX2P35548 RNU6-105P-201ENST00000363909 104 ntBASIC3.44□□□□□ -1.86
MSX2P35548 Y_RNA.541-201ENST00000384640 113 ntBASIC3.44□□□□□ -1.86
MSX2P35548 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
MSX2P35548 Y_RNA.581-201ENST00000391017 97 ntBASIC3.44□□□□□ -1.86
MSX2P35548 AL358453.1-201ENST00000422522 250 ntBASIC3.44□□□□□ -1.86
MSX2P35548 AL590383.1-201ENST00000428602 75 ntBASIC3.44□□□□□ -1.86
MSX2P35548 Z82210.1-201ENST00000440037 231 ntBASIC3.44□□□□□ -1.86
MSX2P35548 PRELID3BP1-201ENST00000457142 540 ntBASIC3.44□□□□□ -1.86
MSX2P35548 RNU7-87P-201ENST00000459343 62 ntBASIC3.44□□□□□ -1.86
MSX2P35548 RN7SL442P-201ENST00000473804 320 ntBASIC3.44□□□□□ -1.86
MSX2P35548 RPS4XP22-201ENST00000480755 780 ntBASIC3.44□□□□□ -1.86
MSX2P35548 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.44□□□□□ -1.86
MSX2P35548 RPL30P5-201ENST00000494923 336 ntBASIC3.44□□□□□ -1.86
MSX2P35548 RNU6-1338P-201ENST00000516328 91 ntBASIC3.44□□□□□ -1.86
MSX2P35548 RNU6-1012P-201ENST00000516606 109 ntBASIC3.44□□□□□ -1.86
MSX2P35548 SCARNA14-201ENST00000516903 136 ntBASIC3.44□□□□□ -1.86
MSX2P35548 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.44□□□□□ -1.86
MSX2P35548 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.44□□□□□ -1.86
MSX2P35548 AC010928.2-201ENST00000588017 287 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 284.8 ms