Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AP002770.2-201ENST00000543613 532 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 AL121821.2-201ENST00000556081 394 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.86□□□□□ -1.95
SHMT1P34896 MIR548S-201ENST00000581352 82 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 AC005498.1-201ENST00000592125 465 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 AP000787.2-201ENST00000604432 568 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 APOOP1-201ENST00000604695 592 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 AL357078.3-201ENST00000607528 618 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 AL121757.2-201ENST00000611223 313 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 AL136221.1-201ENST00000621449 509 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 Z69720.2-201ENST00000624755 279 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
SHMT1P34896 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
SHMT1P34896 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 RNU6-254P-201ENST00000363377 107 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 Y_RNA.279-201ENST00000364763 95 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 Y_RNA.414-201ENST00000384011 101 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 SNORA32.2-201ENST00000384049 122 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 RNU6-750P-201ENST00000390946 107 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 Z98742.3-201ENST00000418637 326 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.85□□□□□ -1.95
SHMT1P34896 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.85□□□□□ -1.95
SHMT1P34896 AL353572.1-201ENST00000442490 417 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 RPL7P12-201ENST00000446719 750 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.85□□□□□ -1.95
SHMT1P34896 AC233279.1-201ENST00000455300 423 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 AC117503.1-201ENST00000472241 394 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 RPS27P26-201ENST00000494583 239 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 ANXA2P1-201ENST00000505539 926 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SHMT1P34896 AC116655.1-201ENST00000508324 901 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.85□□□□□ -1.95
SHMT1P34896 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.85□□□□□ -1.95
SHMT1P34896 Y_RNA.687-201ENST00000516558 91 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 BTF3P12-201ENST00000519620 469 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 RNU6-323P-201ENST00000521915 107 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.85□□□□□ -1.95
SHMT1P34896 MIR5692C1-201ENST00000585309 91 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.85□□□□□ -1.95
SHMT1P34896 AC008121.1-201ENST00000603244 268 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 RPL23AP88-201ENST00000605759 454 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 RNU6-85P-201ENST00000605989 107 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 AL359198.2-201ENST00000611836 194 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 MIR6733-201ENST00000635723 61 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.85□□□□□ -1.95
SHMT1P34896 AC138915.1-201ENST00000565427 1685 ntBASIC2.85□□□□□ -1.95
SHMT1P34896 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SHMT1P34896 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.84□□□□□ -1.95
SHMT1P34896 RNU6-1013P-201ENST00000384180 107 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 MIR450B-201ENST00000401182 78 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 RNU2-49P-201ENST00000410666 184 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 RNA5SP492-201ENST00000411330 114 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 RPL19P1-201ENST00000411635 428 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 AL161651.1-201ENST00000440882 223 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 AC092001.1-201ENST00000453012 261 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.84□□□□□ -1.95
SHMT1P34896 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.84□□□□□ -1.95
SHMT1P34896 RNU6-581P-201ENST00000516214 105 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SHMT1P34896 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.84□□□□□ -1.95
SHMT1P34896 AC007151.1-201ENST00000572774 483 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 OR1M4P-201ENST00000589199 287 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 CTHRC1P1-201ENST00000605383 469 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 AC009248.2-201ENST00000619826 254 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 RMST_7.1-201ENST00000621935 268 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 MIR1291-201ENST00000627649 87 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 AC110079.1-202ENST00000635213 138 ntBASIC2.84□□□□□ -1.95
SHMT1P34896 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
SHMT1P34896 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.83□□□□□ -1.96
SHMT1P34896 AC010889.1-201ENST00000566193 2666 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 CBX3P1-201ENST00000325243 554 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-37P-201ENST00000362692 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-11P-201ENST00000364234 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-25P-201ENST00000383873 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-1-201ENST00000383898 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-767P-201ENST00000384132 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-48P-201ENST00000384161 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-36P-201ENST00000384172 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-4P-201ENST00000384205 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-5P-201ENST00000384238 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-3P-201ENST00000384314 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-16P-201ENST00000384385 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-15P-201ENST00000384534 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-2-201ENST00000384627 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-29P-201ENST00000384637 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-9-201ENST00000384776 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-33P-201ENST00000384793 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-1148P-201ENST00000410992 104 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.83□□□□□ -1.96
SHMT1P34896 IFNA20P-201ENST00000436840 528 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 AC098614.3-201ENST00000438957 440 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 MTATP6P23-201ENST00000440153 476 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 AC104389.3-201ENST00000445629 235 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.83□□□□□ -1.96
SHMT1P34896 RNU7-66P-201ENST00000459469 62 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.83□□□□□ -1.96
SHMT1P34896 AC026436.1-201ENST00000510537 270 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 AC046134.1-201ENST00000514454 666 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms