Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC087854.1-201ENST00000519706 414 ntBASIC3.11□□□□□ -1.91
CIITAP33076 IMMP1LP2-201ENST00000552954 492 ntBASIC3.11□□□□□ -1.91
CIITAP33076 AC007151.1-201ENST00000572774 483 ntBASIC3.11□□□□□ -1.91
CIITAP33076 AC100830.2-201ENST00000581636 240 ntBASIC3.11□□□□□ -1.91
CIITAP33076 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CIITAP33076 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.11□□□□□ -1.91
CIITAP33076 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CIITAP33076 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
CIITAP33076 MIR412-201ENST00000362142 91 ntBASIC3.1□□□□□ -1.91
CIITAP33076 Y_RNA.138-201ENST00000363462 102 ntBASIC3.1□□□□□ -1.91
CIITAP33076 Y_RNA.500-201ENST00000384466 111 ntBASIC3.1□□□□□ -1.91
CIITAP33076 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
CIITAP33076 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.1□□□□□ -1.91
CIITAP33076 MIR1289-1-201ENST00000408836 144 ntBASIC3.1□□□□□ -1.91
CIITAP33076 Y_RNA.623-201ENST00000411128 95 ntBASIC3.1□□□□□ -1.91
CIITAP33076 RPL37P10-201ENST00000412884 288 ntBASIC3.1□□□□□ -1.91
CIITAP33076 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.1□□□□□ -1.91
CIITAP33076 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.1□□□□□ -1.91
CIITAP33076 AL365496.1-201ENST00000426885 215 ntBASIC3.1□□□□□ -1.91
CIITAP33076 SAR1AP4-201ENST00000429225 591 ntBASIC3.1□□□□□ -1.91
CIITAP33076 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.1□□□□□ -1.91
CIITAP33076 MTCYBP6-201ENST00000441810 138 ntBASIC3.1□□□□□ -1.91
CIITAP33076 BRK1P2-201ENST00000442875 223 ntBASIC3.1□□□□□ -1.91
CIITAP33076 Y_RNA.635-201ENST00000459041 101 ntBASIC3.1□□□□□ -1.91
CIITAP33076 AC026801.1-201ENST00000497178 464 ntBASIC3.1□□□□□ -1.91
CIITAP33076 AC079140.5-201ENST00000507882 310 ntBASIC3.1□□□□□ -1.91
CIITAP33076 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.1□□□□□ -1.91
CIITAP33076 SNORA9.3-201ENST00000516383 129 ntBASIC3.1□□□□□ -1.91
CIITAP33076 RNU6-703P-201ENST00000516946 107 ntBASIC3.1□□□□□ -1.91
CIITAP33076 SNORA31.19-201ENST00000517079 126 ntBASIC3.1□□□□□ -1.91
CIITAP33076 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.1□□□□□ -1.91
CIITAP33076 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.1□□□□□ -1.91
CIITAP33076 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.1□□□□□ -1.91
CIITAP33076 ELOCP5-201ENST00000604924 333 ntBASIC3.1□□□□□ -1.91
CIITAP33076 RNU6-85P-201ENST00000605989 107 ntBASIC3.1□□□□□ -1.91
CIITAP33076 AC064836.2-201ENST00000609491 462 ntBASIC3.1□□□□□ -1.91
CIITAP33076 AC098657.3-201ENST00000620434 263 ntBASIC3.1□□□□□ -1.91
CIITAP33076 AC110079.1-202ENST00000635213 138 ntBASIC3.1□□□□□ -1.91
CIITAP33076 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.1□□□□□ -1.91
CIITAP33076 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.1□□□□□ -1.91
CIITAP33076 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
CIITAP33076 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
CIITAP33076 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.09□□□□□ -1.91
CIITAP33076 Z98749.2-208ENST00000381646 500 ntBASIC3.09□□□□□ -1.91
CIITAP33076 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CIITAP33076 Y_RNA.510-201ENST00000384511 114 ntBASIC3.09□□□□□ -1.91
CIITAP33076 RNU2-68P-201ENST00000410878 191 ntBASIC3.09□□□□□ -1.91
CIITAP33076 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.09□□□□□ -1.91
CIITAP33076 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.09□□□□□ -1.91
CIITAP33076 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.09□□□□□ -1.91
CIITAP33076 RPL26P9-201ENST00000457466 433 ntBASIC3.09□□□□□ -1.91
CIITAP33076 RNU7-152P-201ENST00000458982 64 ntBASIC3.09□□□□□ -1.91
CIITAP33076 AC130509.1-201ENST00000464158 433 ntBASIC3.09□□□□□ -1.91
CIITAP33076 HMGB1P30-201ENST00000492455 606 ntBASIC3.09□□□□□ -1.91
CIITAP33076 RNU1-103P-201ENST00000516502 125 ntBASIC3.09□□□□□ -1.91
CIITAP33076 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.09□□□□□ -1.91
CIITAP33076 AC026371.1-201ENST00000551867 419 ntBASIC3.09□□□□□ -1.91
CIITAP33076 NACAP3-201ENST00000552100 481 ntBASIC3.09□□□□□ -1.91
CIITAP33076 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.09□□□□□ -1.91
CIITAP33076 AC124303.1-201ENST00000605703 360 ntBASIC3.09□□□□□ -1.91
CIITAP33076 AC005046.1-201ENST00000608515 625 ntBASIC3.09□□□□□ -1.91
CIITAP33076 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.09□□□□□ -1.91
CIITAP33076 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.09□□□□□ -1.92
CIITAP33076 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
CIITAP33076 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CIITAP33076 AC004944.1-201ENST00000517807 3059 ntBASIC3.08□□□□□ -1.92
CIITAP33076 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
CIITAP33076 RNU6-778P-201ENST00000363269 103 ntBASIC3.08□□□□□ -1.92
CIITAP33076 RNU6-1329P-201ENST00000365664 107 ntBASIC3.08□□□□□ -1.92
CIITAP33076 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CIITAP33076 RNU6-43P-201ENST00000384302 107 ntBASIC3.08□□□□□ -1.92
CIITAP33076 Y_RNA.482-201ENST00000384377 111 ntBASIC3.08□□□□□ -1.92
CIITAP33076 RNU6-1297P-201ENST00000384415 104 ntBASIC3.08□□□□□ -1.92
CIITAP33076 MIR181B1-201ENST00000385240 110 ntBASIC3.08□□□□□ -1.92
CIITAP33076 Y_RNA.579-201ENST00000390939 94 ntBASIC3.08□□□□□ -1.92
CIITAP33076 RNY4P36-201ENST00000391116 96 ntBASIC3.08□□□□□ -1.92
CIITAP33076 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.08□□□□□ -1.92
CIITAP33076 HMGN2P30-201ENST00000423237 256 ntBASIC3.08□□□□□ -1.92
CIITAP33076 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.08□□□□□ -1.92
CIITAP33076 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.08□□□□□ -1.92
CIITAP33076 AC005741.1-201ENST00000511094 432 ntBASIC3.08□□□□□ -1.92
CIITAP33076 RNU6-572P-201ENST00000516724 80 ntBASIC3.08□□□□□ -1.92
CIITAP33076 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.08□□□□□ -1.92
CIITAP33076 AC022634.1-201ENST00000520765 532 ntBASIC3.08□□□□□ -1.92
CIITAP33076 AL391261.3-201ENST00000557194 520 ntBASIC3.08□□□□□ -1.92
CIITAP33076 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.08□□□□□ -1.92
CIITAP33076 AL355598.1-201ENST00000604169 202 ntBASIC3.08□□□□□ -1.92
CIITAP33076 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.08□□□□□ -1.92
CIITAP33076 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
CIITAP33076 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CIITAP33076 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CIITAP33076 AC138915.1-201ENST00000565427 1685 ntBASIC3.08□□□□□ -1.92
CIITAP33076 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
CIITAP33076 AL365361.1-201ENST00000566942 3481 ntBASIC3.07□□□□□ -1.92
CIITAP33076 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
CIITAP33076 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
CIITAP33076 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.07□□□□□ -1.92
CIITAP33076 AC062016.1-201ENST00000355719 319 ntBASIC3.07□□□□□ -1.92
CIITAP33076 RNU6-1188P-201ENST00000363795 107 ntBASIC3.07□□□□□ -1.92
CIITAP33076 Y_RNA.315-201ENST00000365117 102 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms