Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CBX3P6-201ENST00000430257 527 ntBASIC3.51□□□□□ -1.85
HLA-DOAP06340 OR2AQ1P-201ENST00000451972 200 ntBASIC3.51□□□□□ -1.85
HLA-DOAP06340 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.51□□□□□ -1.85
HLA-DOAP06340 AL583843.1-201ENST00000456070 346 ntBASIC3.51□□□□□ -1.85
HLA-DOAP06340 AC116655.1-201ENST00000508324 901 ntBASIC3.51□□□□□ -1.85
HLA-DOAP06340 RNA5SP367-201ENST00000516557 118 ntBASIC3.51□□□□□ -1.85
HLA-DOAP06340 AC025755.1-201ENST00000521306 278 ntBASIC3.51□□□□□ -1.85
HLA-DOAP06340 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HLA-DOAP06340 AL161670.1-201ENST00000554348 137 ntBASIC3.51□□□□□ -1.85
HLA-DOAP06340 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.51□□□□□ -1.85
HLA-DOAP06340 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.51□□□□□ -1.85
HLA-DOAP06340 AC007318.2-201ENST00000620999 243 ntBASIC3.51□□□□□ -1.85
HLA-DOAP06340 AL606534.2-204ENST00000635008 178 ntBASIC3.51□□□□□ -1.85
HLA-DOAP06340 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
HLA-DOAP06340 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.51□□□□□ -1.85
HLA-DOAP06340 AC008568.2-201ENST00000623862 2313 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
HLA-DOAP06340 SNORA31-201ENST00000362607 130 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 RNA5SP383-201ENST00000362934 120 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 SNORA9.2-201ENST00000365361 133 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
HLA-DOAP06340 Y_RNA.500-201ENST00000384466 111 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 Y_RNA.533-201ENST00000384596 114 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 MIR3074-201ENST00000384885 81 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 RNU2-33P-201ENST00000410344 192 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.5□□□□□ -1.85
HLA-DOAP06340 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.5□□□□□ -1.85
HLA-DOAP06340 AL135938.1-201ENST00000443141 297 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 AC009237.8-201ENST00000445492 379 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 RN7SL283P-201ENST00000489055 303 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 AC114801.2-201ENST00000503825 781 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.5□□□□□ -1.85
HLA-DOAP06340 MRPS35P2-201ENST00000508242 191 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 AC091826.1-201ENST00000514065 313 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 RNA5SP165-201ENST00000517142 115 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 Y_RNA.721-201ENST00000517207 102 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 HSBP1P1-201ENST00000555205 166 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 SUB1P3-201ENST00000564581 315 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 AC004805.2-201ENST00000605382 482 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 MIR1244-1-201ENST00000612829 85 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 MIR1244-3-201ENST00000635744 85 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 MIR1244-2-201ENST00000636449 85 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 MIR1244-4-202ENST00000636813 85 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.5□□□□□ -1.85
HLA-DOAP06340 AC096644.4-201ENST00000563417 2912 ntBASIC3.5□□□□□ -1.85
HLA-DOAP06340 SNORD56.3-201ENST00000363507 71 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 SNORD14B-201ENST00000364533 90 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 RNU6-702P-201ENST00000364982 107 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 RNU6-827P-201ENST00000365553 106 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 RNU6-784P-201ENST00000384330 106 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
HLA-DOAP06340 MIR1290-201ENST00000408735 78 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 MIR1289-1-201ENST00000408836 144 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.49□□□□□ -1.85
HLA-DOAP06340 YPEL5P1-201ENST00000419731 367 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.49□□□□□ -1.85
HLA-DOAP06340 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.49□□□□□ -1.85
HLA-DOAP06340 PCNPP5-201ENST00000452246 481 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 AC112492.4-201ENST00000456549 352 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 RNU7-169P-201ENST00000459456 61 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 UBE2DNL-203ENST00000474922 222 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 RPL17P19-201ENST00000489069 552 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 RNU2-58P-201ENST00000516403 183 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 CASP1P1-201ENST00000526345 212 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 AP004242.1-201ENST00000533701 349 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 GNAI2P1-201ENST00000541815 315 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 AC103996.1-201ENST00000555468 102 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.49□□□□□ -1.85
HLA-DOAP06340 GTF3AP2-201ENST00000557014 266 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 CPDP1-201ENST00000579660 283 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.49□□□□□ -1.85
HLA-DOAP06340 AC005899.2-201ENST00000584353 90 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 ELOCP29-201ENST00000588193 334 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 AC124312.5-201ENST00000604451 268 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 U7.8-201ENST00000619968 63 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HLA-DOAP06340 AL035425.3-201ENST00000564206 4996 ntBASIC3.49□□□□□ -1.85
HLA-DOAP06340 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DOAP06340 Y_RNA.210-201ENST00000364161 110 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 RNU6-395P-201ENST00000365662 106 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 DEFB109C-201ENST00000382575 264 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 DEFB109B-201ENST00000382656 264 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 SNORA11.2-201ENST00000408318 127 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 MIR1183-201ENST00000408856 89 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 RNU6-101P-201ENST00000410323 104 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 RNU6-1156P-201ENST00000410365 100 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DOAP06340 SNORD56-201ENST00000413522 71 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.48□□□□□ -1.85
HLA-DOAP06340 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.48□□□□□ -1.85
HLA-DOAP06340 AL136097.1-201ENST00000456945 913 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.48□□□□□ -1.85
HLA-DOAP06340 AC131281.1-201ENST00000522984 164 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 MIR4273-201ENST00000582824 84 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 AC136601.2-201ENST00000604356 474 ntBASIC3.48□□□□□ -1.85
HLA-DOAP06340 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.48□□□□□ -1.85
HLA-DOAP06340 MIR4272-201ENST00000635924 64 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms