Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CLDN9O95484 AL356292.1-201ENST00000283110 373 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 RNU6-78P-201ENST00000362897 107 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 RNU6-546P-201ENST00000383991 107 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 CBX3P9-201ENST00000402326 552 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 Y_RNA.595-201ENST00000410403 105 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.79□□□□□ -2.12
CLDN9O95484 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.79□□□□□ -2.12
CLDN9O95484 MTCYBP5-201ENST00000423752 1135 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.79□□□□□ -2.12
CLDN9O95484 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.79□□□□□ -2.12
CLDN9O95484 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.79□□□□□ -2.12
CLDN9O95484 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.79□□□□□ -2.12
CLDN9O95484 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC1.79□□□□□ -2.12
CLDN9O95484 AL353689.1-201ENST00000438895 199 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 AL136380.1-201ENST00000447970 162 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 HMGN2P23-201ENST00000456759 269 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC1.79□□□□□ -2.12
CLDN9O95484 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.79□□□□□ -2.12
CLDN9O95484 MTCO3P9-201ENST00000506989 781 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC1.79□□□□□ -2.12
CLDN9O95484 MTND3P25-201ENST00000509243 135 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 MTND1P22-201ENST00000510572 951 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 AC107393.1-201ENST00000512403 346 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 RNU6-410P-201ENST00000517006 107 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 OR5AL2P-201ENST00000532185 920 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 AP002453.2-201ENST00000533503 320 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.79□□□□□ -2.12
CLDN9O95484 AC073539.2-201ENST00000597113 165 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.79□□□□□ -2.12
CLDN9O95484 AC108479.2-201ENST00000617314 601 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 AC007792.1-201ENST00000623023 402 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 AL354685.2-201ENST00000448218 1447 ntBASIC1.79□□□□□ -2.12
CLDN9O95484 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CLDN9O95484 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
CLDN9O95484 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
CLDN9O95484 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
CLDN9O95484 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
CLDN9O95484 snoU2_19.1-201ENST00000362361 80 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 RNU6-944P-201ENST00000364023 107 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 SNORD115-7-201ENST00000365306 82 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 Y_RNA.367-201ENST00000365544 101 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 SNORA40.19-201ENST00000390846 128 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 OR9R1P-201ENST00000412200 877 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.78□□□□□ -2.12
CLDN9O95484 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.78□□□□□ -2.12
CLDN9O95484 AL445685.2-201ENST00000422551 342 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.78□□□□□ -2.12
CLDN9O95484 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC1.78□□□□□ -2.12
CLDN9O95484 HMGN2P19-201ENST00000425149 265 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 AL451074.3-201ENST00000437709 472 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.78□□□□□ -2.12
CLDN9O95484 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.78□□□□□ -2.12
CLDN9O95484 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.78□□□□□ -2.12
CLDN9O95484 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.78□□□□□ -2.12
CLDN9O95484 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.78□□□□□ -2.12
CLDN9O95484 AC090572.1-201ENST00000519251 160 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.78□□□□□ -2.12
CLDN9O95484 AC087883.1-201ENST00000551882 391 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 AC007375.1-201ENST00000554513 578 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 MIR3682-201ENST00000581338 84 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 AC078795.2-201ENST00000602835 1252 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 AL627230.6-201ENST00000611129 280 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 RMST_4.1-201ENST00000616886 107 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 U6.114-201ENST00000636407 96 ntBASIC1.78□□□□□ -2.12
CLDN9O95484 FARSBP1-201ENST00000435808 1778 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.77□□□□□ -2.13
CLDN9O95484 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.77□□□□□ -2.13
CLDN9O95484 Y_RNA.122-201ENST00000363331 96 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 RNU5E-7P-201ENST00000365290 117 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 RNU2-48P-201ENST00000410694 191 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 HMGN1P14-201ENST00000412459 517 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 OR6C66P-201ENST00000414917 930 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC1.77□□□□□ -2.13
CLDN9O95484 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.77□□□□□ -2.13
CLDN9O95484 MTND2P9-201ENST00000422293 931 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC1.77□□□□□ -2.13
CLDN9O95484 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.77□□□□□ -2.13
CLDN9O95484 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.77□□□□□ -2.13
CLDN9O95484 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CLDN9O95484 RPL23AP3-201ENST00000453844 468 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 MTCYBP1-201ENST00000454315 1119 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 AL353752.1-201ENST00000454946 260 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 snoU13.14-201ENST00000459372 104 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC1.77□□□□□ -2.13
CLDN9O95484 AC116337.1-201ENST00000509680 687 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 RNU6-965P-201ENST00000516721 96 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 RNU2-44P-201ENST00000516795 194 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 AC109446.2-201ENST00000567872 497 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 MIR4299-201ENST00000577899 72 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 AC098848.2-201ENST00000588023 330 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 AC243960.4-201ENST00000600532 288 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 AL360219.1-201ENST00000610230 366 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 AC009318.2-201ENST00000610917 651 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.77□□□□□ -2.13
CLDN9O95484 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 RMST_7.1-201ENST00000621935 268 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 AC007494.3-201ENST00000624660 743 ntBASIC1.77□□□□□ -2.13
CLDN9O95484 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms