Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS4BO75351 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VPS4BO75351 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS4BO75351 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS4BO75351 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS4BO75351 AC110491.1-201ENST00000562191 2010 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 RNU6-105P-201ENST00000363909 104 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS4BO75351 RNU6-1032P-201ENST00000384100 107 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 RNU6-933P-201ENST00000384424 107 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS4BO75351 MCFD2P1-201ENST00000417812 300 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS4BO75351 EIF4EP2-201ENST00000422816 654 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 BX276092.3-201ENST00000424182 230 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AC006028.1-201ENST00000438379 402 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 NIPA2P5-201ENST00000452282 464 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AC006026.2-201ENST00000457376 180 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AC133134.1-201ENST00000466800 359 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 RPS29P20-201ENST00000489592 171 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AC022447.4-201ENST00000504053 364 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AC022493.2-201ENST00000506122 481 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AK3P2-201ENST00000507976 429 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS4BO75351 RNU6-699P-201ENST00000517081 110 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AP005902.1-201ENST00000521358 186 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS4BO75351 LARP7P3-201ENST00000579888 337 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AL451007.1-201ENST00000595491 289 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AC090617.7-201ENST00000623952 126 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 AL353743.1-202ENST00000431724 1695 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 MAPK10-362ENST00000641864 4484 ntBASIC3.29□□□□□ -1.88
VPS4BO75351 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.28□□□□□ -1.88
VPS4BO75351 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS4BO75351 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS4BO75351 RNU1-100P-201ENST00000365255 165 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 RNU1-115P-201ENST00000365329 160 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AC117470.1-201ENST00000381974 330 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AC017079.2-201ENST00000416102 485 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 COTL1P1-201ENST00000422309 375 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AC008267.5-201ENST00000424928 265 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS4BO75351 RPL26P9-201ENST00000457466 433 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS4BO75351 RPS27P29-201ENST00000463110 252 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AC008155.2-201ENST00000464337 397 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AC128713.1-201ENST00000471495 306 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AP002884.2-201ENST00000471647 395 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 RPL30P14-201ENST00000482744 348 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AC114801.2-201ENST00000503825 781 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 RNU6-612P-201ENST00000516909 102 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 CR383656.8-201ENST00000549046 145 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
VPS4BO75351 BNIP3P16-201ENST00000589779 534 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 YPEL5P2-201ENST00000605553 359 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AC005014.2-201ENST00000607795 599 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AL162274.2-201ENST00000614406 332 ntBASIC3.28□□□□□ -1.88
VPS4BO75351 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS4BO75351 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
VPS4BO75351 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
VPS4BO75351 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS4BO75351 SNORD56.3-201ENST00000363507 71 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 Y_RNA.145-201ENST00000363527 102 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 RNU6-639P-201ENST00000384074 107 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 RNY1P14-201ENST00000384426 108 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 Y_RNA.510-201ENST00000384511 114 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 DBIP2-201ENST00000419076 262 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS4BO75351 TRIAP1P1-201ENST00000427062 225 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 AC005300.1-201ENST00000428401 373 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS4BO75351 RBMY2UP-201ENST00000453474 324 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 AC010099.1-201ENST00000455434 375 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 HMGN2P13-201ENST00000476476 274 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 AC025518.1-201ENST00000479856 347 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 AC068781.1-201ENST00000488231 618 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 RNU6-120P-201ENST00000516077 103 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 SNORA70.18-201ENST00000516696 98 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 AC021739.1-201ENST00000559631 174 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS4BO75351 MIR4325-201ENST00000583049 90 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 AL162730.1-201ENST00000605734 292 ntBASIC3.27□□□□□ -1.89
VPS4BO75351 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS4BO75351 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS4BO75351 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS4BO75351 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS4BO75351 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS4BO75351 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS4BO75351 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS4BO75351 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS4BO75351 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS4BO75351 U3.6-201ENST00000363622 211 ntBASIC3.26□□□□□ -1.89
VPS4BO75351 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS4BO75351 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS4BO75351 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS4BO75351 RPL17P19-201ENST00000489069 552 ntBASIC3.26□□□□□ -1.89
VPS4BO75351 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS4BO75351 PHBP14-201ENST00000512887 367 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms