Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 SNORD56.3-201ENST00000363507 71 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 SNORD113-7-201ENST00000363762 77 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 Y_RNA.252-201ENST00000364556 101 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 RNU6-890P-201ENST00000384121 107 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 Y_RNA.455-201ENST00000384230 98 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
TRIM38O00635 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.34□□□□□ -1.87
TRIM38O00635 AC093151.1-201ENST00000427711 313 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 RPS15AP5-201ENST00000436276 388 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 HMGN2P10-201ENST00000448085 265 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 GSTA11P-201ENST00000452866 669 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 RNU7-167P-201ENST00000459160 62 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 RPL23AP67-201ENST00000465341 474 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.34□□□□□ -1.87
TRIM38O00635 AC097473.1-201ENST00000508142 408 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 FCF1P8-201ENST00000510322 597 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 MIR892C-201ENST00000516410 77 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.34□□□□□ -1.87
TRIM38O00635 AC138761.3-201ENST00000579993 334 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 MIR4276-201ENST00000584832 70 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 AC023043.2-201ENST00000589678 1026 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 BNIP3P16-201ENST00000589779 534 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.34□□□□□ -1.87
TRIM38O00635 AC012119.1-201ENST00000603184 222 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 AC104695.3-201ENST00000604052 296 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 AC006157.1-201ENST00000611750 366 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 MIR6134-201ENST00000617606 109 ntBASIC3.34□□□□□ -1.87
TRIM38O00635 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
TRIM38O00635 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
TRIM38O00635 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
TRIM38O00635 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
TRIM38O00635 KPNA2P1-201ENST00000458289 1591 ntBASIC3.34□□□□□ -1.88
TRIM38O00635 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.33□□□□□ -1.88
TRIM38O00635 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.33□□□□□ -1.88
TRIM38O00635 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
TRIM38O00635 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.33□□□□□ -1.88
TRIM38O00635 Z83843.1-201ENST00000604070 3685 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
TRIM38O00635 SNORD3E-201ENST00000362899 217 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 Y_RNA.212-201ENST00000364177 102 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 MIR34A-201ENST00000385130 110 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 AC096649.2-201ENST00000416186 393 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 AL139396.1-201ENST00000421137 167 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 DPH3P2-201ENST00000422618 250 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.33□□□□□ -1.88
TRIM38O00635 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.33□□□□□ -1.88
TRIM38O00635 AC104472.2-201ENST00000469035 601 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.33□□□□□ -1.88
TRIM38O00635 AC062037.2-201ENST00000610137 73 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 AC133104.2-201ENST00000615272 193 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 AC092608.2-201ENST00000624427 218 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
TRIM38O00635 AL353743.1-202ENST00000431724 1695 ntBASIC3.33□□□□□ -1.88
TRIM38O00635 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.32□□□□□ -1.88
TRIM38O00635 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
TRIM38O00635 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRIM38O00635 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRIM38O00635 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.32□□□□□ -1.88
TRIM38O00635 RNU1-35P-201ENST00000362782 153 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 Z98749.2-208ENST00000381646 500 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 RNU6-1027P-201ENST00000383998 107 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 AL592148.1-201ENST00000413568 445 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 ARL5AP4-201ENST00000430731 512 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 PCNPP5-201ENST00000452246 481 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.32□□□□□ -1.88
TRIM38O00635 MTND3P25-201ENST00000509243 135 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 AC010265.1-201ENST00000513509 211 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 Y_RNA.661-201ENST00000516003 99 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 SNORD19.2-201ENST00000516978 73 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.32□□□□□ -1.88
TRIM38O00635 AC090115.3-201ENST00000553218 849 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 OR11H5P-201ENST00000554039 926 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 LINC00933-203ENST00000559812 219 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.32□□□□□ -1.88
TRIM38O00635 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.32□□□□□ -1.88
TRIM38O00635 AC025281.1-201ENST00000567026 265 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.32□□□□□ -1.88
TRIM38O00635 AC016727.2-201ENST00000603988 621 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 U2.1-201ENST00000618978 145 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.32□□□□□ -1.88
TRIM38O00635 SCARNA15.3-201ENST00000626315 122 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 SCARNA4.1-201ENST00000628597 123 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 U2.22-201ENST00000636441 106 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRIM38O00635 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRIM38O00635 ZNF519P1-201ENST00000449011 1626 ntBASIC3.32□□□□□ -1.88
TRIM38O00635 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.32□□□□□ -1.88
TRIM38O00635 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
TRIM38O00635 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.32□□□□□ -1.88
TRIM38O00635 SNORD116-11-201ENST00000383882 92 ntBASIC3.31□□□□□ -1.88
TRIM38O00635 Y_RNA.396-201ENST00000383949 103 ntBASIC3.31□□□□□ -1.88
TRIM38O00635 Y_RNA.473-201ENST00000384333 102 ntBASIC3.31□□□□□ -1.88
TRIM38O00635 Y_RNA.556-201ENST00000384677 113 ntBASIC3.31□□□□□ -1.88
TRIM38O00635 MIR767-201ENST00000390228 109 ntBASIC3.31□□□□□ -1.88
TRIM38O00635 SNORA48.8-201ENST00000391324 134 ntBASIC3.31□□□□□ -1.88
TRIM38O00635 RNU2-64P-201ENST00000411315 191 ntBASIC3.31□□□□□ -1.88
TRIM38O00635 AL356968.1-201ENST00000416622 474 ntBASIC3.31□□□□□ -1.88
TRIM38O00635 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms