Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 APOA2-205ENST00000468465 421 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AC139453.2-201ENST00000487255 133 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AC105245.1-201ENST00000581934 244 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AC112484.5-201ENST00000624189 228 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AL136360.1-201ENST00000503377 1900 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 AC104260.2-201ENST00000623551 3497 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 RNU1-75P-201ENST00000347264 129 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 Y_RNA.93-201ENST00000363066 109 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 MIR223-201ENST00000385204 110 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 RN7SKP16-201ENST00000410180 299 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 HMGN2P30-201ENST00000423237 256 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 RN7SL172P-201ENST00000460535 303 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 AC097484.1-201ENST00000471148 389 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 RN7SL30P-201ENST00000488416 306 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 AIG1P1-201ENST00000503376 148 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 RNU6-1337P-201ENST00000516525 95 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 SNORA31.20-201ENST00000517111 133 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 AC141557.1-201ENST00000540982 400 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 MIR5006-201ENST00000583027 110 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 AC011447.4-201ENST00000587562 111 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 SUMO2P15-201ENST00000604285 278 ntBASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS9D1Q9Y2B5 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 U3.2-201ENST00000362981 210 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 MIR181B1-201ENST00000385240 110 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 RNU6-788P-201ENST00000390967 104 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 SNORA26-201ENST00000391286 122 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 AC078817.1-201ENST00000492623 435 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 RNU6-904P-201ENST00000516206 101 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 RNU6-113P-201ENST00000516653 101 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 IGKV3-31-201ENST00000523109 329 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 AC068339.1-201ENST00000526965 141 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 MTND6P33-201ENST00000571794 183 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 AC005972.2-201ENST00000604690 348 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 FTX_3.1-201ENST00000610451 147 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 AL137067.1-201ENST00000615933 120 ntBASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC5.02□□□□□ -1.61
VPS9D1Q9Y2B5 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 SNORA73.1-201ENST00000363107 205 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 Y_RNA.124-201ENST00000363339 93 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 RNY4P6-201ENST00000363667 96 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 RNY1P1-201ENST00000364372 112 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 RNA5-8SP4-201ENST00000365096 150 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 Y_RNA.362-201ENST00000365518 110 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 RNU6-629P-201ENST00000384061 103 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 RNU6-622P-201ENST00000384272 103 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 RNU6-242P-201ENST00000384359 107 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 SNORD116-13-201ENST00000384408 92 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 RNU6-279P-201ENST00000391297 101 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 AC007064.1-201ENST00000412238 351 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 BX510359.2-201ENST00000417920 305 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 H2AFZP5-201ENST00000446960 382 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 RNU6-893P-201ENST00000458841 100 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 RN7SL132P-201ENST00000478131 296 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 RN7SL727P-201ENST00000482164 296 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 AC093270.2-201ENST00000486157 792 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 RPL36AP21-201ENST00000490372 323 ntBASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
VPS9D1Q9Y2B5 AC006133.1-201ENST00000617106 264 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms