Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-143P-201ENST00000516942 93 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 RNU6-586P-201ENST00000517265 104 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 OR5B19P-201ENST00000531766 928 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC012414.6-201ENST00000568241 401 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 MIR424-201ENST00000362227 98 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 snoU2_19.1-201ENST00000362361 80 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 RNY1-201ENST00000364228 113 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AL357139.1-201ENST00000407792 426 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 RNU4-22P-201ENST00000411058 166 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC104563.1-201ENST00000476147 376 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 MTND1P3-201ENST00000484956 952 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC018868.1-201ENST00000491307 315 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC009646.1-201ENST00000510455 318 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 RNA5SP384-201ENST00000516615 116 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC005668.1-201ENST00000571142 476 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC005730.3-201ENST00000583067 366 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC174048.1-201ENST00000603389 144 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AL391646.1-201ENST00000603860 190 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 Z82243.1-201ENST00000609432 473 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AL121890.5-201ENST00000620848 304 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
SCN3AQ9NY46 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC0.8□□□□□ -2.28
SCN3AQ9NY46 RNU6-777P-201ENST00000364265 104 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 RNU1-78P-201ENST00000391248 165 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 BTF3L4P2-201ENST00000392798 346 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 AL353621.1-201ENST00000418219 243 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 MTND4LP16-201ENST00000440828 295 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 RPL30P6-201ENST00000475925 342 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 TPT1P8-201ENST00000510120 555 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 MTCYBP43-201ENST00000513621 740 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 SNORA31.16-201ENST00000516773 139 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 AC018630.3-201ENST00000542637 96 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.8□□□□□ -2.28
SCN3AQ9NY46 RPL30P11-203ENST00000598995 310 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 AL159153.1-201ENST00000619688 317 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
SCN3AQ9NY46 PVT1_3.1-201ENST00000620853 95 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC0.8□□□□□ -2.28
SCN3AQ9NY46 AC112204.3-201ENST00000623822 332 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 AC090517.3-201ENST00000625170 141 ntBASIC0.8□□□□□ -2.28
SCN3AQ9NY46 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.8□□□□□ -2.28
SCN3AQ9NY46 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
SCN3AQ9NY46 RNU6-853P-201ENST00000364306 107 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 SMIM11P1-201ENST00000369586 178 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 SNORD116-12-201ENST00000384468 92 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 MIR19A-201ENST00000384878 82 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 C1DP1-201ENST00000426049 402 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 RPS15AP10-201ENST00000432472 382 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AC108059.3-201ENST00000456388 214 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AC112492.4-201ENST00000456549 352 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 snoU13.14-201ENST00000459372 104 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 RNU5F-2P-201ENST00000516066 82 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AC016727.2-201ENST00000603988 621 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AC099785.1-201ENST00000605697 437 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 uc_338.15-201ENST00000615470 191 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AC123767.1-202ENST00000620407 817 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 MIR6835-201ENST00000621552 64 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 U6.99-201ENST00000637524 83 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AC068700.1-201ENST00000565862 3754 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 RNU6-1010P-201ENST00000362757 107 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 RNU6-512P-201ENST00000364438 103 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 RNU6-360P-201ENST00000390944 104 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AL353752.1-201ENST00000454946 260 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 RNA5SP57-201ENST00000459463 123 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AC103851.1-201ENST00000506833 274 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AP003392.2-201ENST00000527269 208 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AC068587.4-201ENST00000533893 186 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN3AQ9NY46 BNIP3P27-201ENST00000599991 412 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AP002802.2-201ENST00000605877 235 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AL365204.3-201ENST00000612448 685 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AL512506.1-201ENST00000613918 449 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 AP003476.1-201ENST00000623984 516 ntBASIC0.79□□□□□ -2.28
SCN3AQ9NY46 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
SCN3AQ9NY46 MTND5P33-201ENST00000571250 1450 ntBASIC0.78□□□□□ -2.28
SCN3AQ9NY46 SNORD114-6-201ENST00000364393 72 ntBASIC0.78□□□□□ -2.28
SCN3AQ9NY46 MIR29B2-201ENST00000385055 81 ntBASIC0.78□□□□□ -2.28
SCN3AQ9NY46 RNA5SP501-201ENST00000410990 112 ntBASIC0.78□□□□□ -2.28
SCN3AQ9NY46 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
SCN3AQ9NY46 AC104651.1-201ENST00000427559 735 ntBASIC0.78□□□□□ -2.28
SCN3AQ9NY46 AL161651.1-201ENST00000440882 223 ntBASIC0.78□□□□□ -2.28
SCN3AQ9NY46 AHI1-208ENST00000488690 712 ntTSL 5 BASIC0.78□□□□□ -2.28
SCN3AQ9NY46 UBL5P1-201ENST00000507979 193 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms