Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SNRPGP18-201ENST00000553000 214 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 AL391840.1-201ENST00000571144 367 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 MIR548AC-201ENST00000585049 88 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 AL096840.1-201ENST00000603287 93 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 AC005034.5-201ENST00000604219 466 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 AC091932.3-201ENST00000624223 323 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
VPS39Q96JC1 KPNA2P1-201ENST00000458289 1591 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
VPS39Q96JC1 RBBP8P1-201ENST00000449447 1844 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 RNU6-1010P-201ENST00000362757 107 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 RNU1-23P-201ENST00000363361 144 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 RNU6-1032P-201ENST00000384100 107 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 RNU6-1029P-201ENST00000384109 107 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 RNU4-52P-201ENST00000384209 138 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 RNU6-1119P-201ENST00000384349 108 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 SNORA51.11-201ENST00000384442 131 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 RNU6-550P-201ENST00000391057 101 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 Y_RNA.623-201ENST00000411128 95 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.13□□□□□ -2.07
VPS39Q96JC1 BTF3L4P1-201ENST00000413813 468 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 OR6C66P-201ENST00000414917 930 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 AC016907.1-201ENST00000419483 435 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 MTCYBP5-201ENST00000423752 1135 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 AL451074.3-201ENST00000437709 472 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.13□□□□□ -2.07
VPS39Q96JC1 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.13□□□□□ -2.07
VPS39Q96JC1 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.13□□□□□ -2.07
VPS39Q96JC1 SNORD27.1-201ENST00000516319 72 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 RNU6-586P-201ENST00000517265 104 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 AC109329.1-201ENST00000518744 317 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.13□□□□□ -2.07
VPS39Q96JC1 RANP3-201ENST00000530970 276 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.13□□□□□ -2.07
VPS39Q96JC1 SNRPGP17-201ENST00000603780 214 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 ELOCP5-201ENST00000604924 333 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 AC093788.1-201ENST00000609356 927 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 AC072046.2-201ENST00000618366 268 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 MTND5P6-201ENST00000422338 1798 ntBASIC2.13□□□□□ -2.07
VPS39Q96JC1 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
VPS39Q96JC1 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
VPS39Q96JC1 RNU6-1097P-201ENST00000363586 107 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 RNU6-843P-201ENST00000384454 104 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 MIR518A2-201ENST00000384966 87 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 MIR10A-201ENST00000385043 110 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 MIR454-201ENST00000390180 115 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 MIR676-201ENST00000390702 67 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 RNU6-1140P-201ENST00000410517 106 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 RNA5SP450-201ENST00000411206 102 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.12□□□□□ -2.07
VPS39Q96JC1 AL353193.1-201ENST00000421444 268 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AL365338.1-201ENST00000422282 858 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC008267.5-201ENST00000424928 265 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC079781.2-201ENST00000446424 169 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 Z83846.1-201ENST00000446798 265 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC104058.1-201ENST00000448028 297 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 MTND1P29-201ENST00000448112 647 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 RPL23AP7-203ENST00000449021 469 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.12□□□□□ -2.07
VPS39Q96JC1 AL137159.1-201ENST00000452808 512 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.12□□□□□ -2.07
VPS39Q96JC1 RNU6-717P-201ENST00000459076 104 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC025033.1-201ENST00000463883 194 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 MTAPP1-201ENST00000489154 819 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC079804.2-201ENST00000490376 200 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.12□□□□□ -2.07
VPS39Q96JC1 AP003072.2-201ENST00000527756 676 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC009063.1-201ENST00000563342 702 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 MTCYBP33-201ENST00000575007 1130 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 MIR4513-201ENST00000581077 86 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC008752.3-201ENST00000588113 712 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AL391646.1-201ENST00000603860 190 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC138649.3-201ENST00000622154 254 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 AC009161.2-201ENST00000624626 138 ntBASIC2.12□□□□□ -2.07
VPS39Q96JC1 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.12□□□□□ -2.07
VPS39Q96JC1 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
VPS39Q96JC1 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 MTND5P17-201ENST00000418405 1603 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
VPS39Q96JC1 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 RNU6-1287P-201ENST00000362914 107 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 SNORD14B-201ENST00000364533 90 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 RNU4-75P-201ENST00000364621 146 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 RNU6-1303P-201ENST00000364841 107 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 RNU6-1060P-201ENST00000384664 107 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 GSTA9P-201ENST00000406231 611 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 SNORA11.4-201ENST00000408823 129 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 AL021397.1-201ENST00000451806 248 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
VPS39Q96JC1 AC010486.1-201ENST00000511793 424 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.11□□□□□ -2.07
VPS39Q96JC1 RNU2-53P-201ENST00000516257 147 ntBASIC2.11□□□□□ -2.07
VPS39Q96JC1 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms