Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SNORD42.2-201ENST00000365570 69 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 RNU6-310P-201ENST00000384655 107 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 AP000567.1-201ENST00000406413 156 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 AC099548.1-201ENST00000421443 426 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 RPL23AP82-202ENST00000427528 469 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 DAP3P1-201ENST00000441522 278 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 AC113155.1-201ENST00000511141 769 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 RNU6-307P-201ENST00000516743 106 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 AL080274.1-201ENST00000605565 220 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 Y_RNA.812-201ENST00000610788 101 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 Y_RNA.784-201ENST00000613803 101 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 Y_RNA.787-201ENST00000616522 101 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 Y_RNA.780-201ENST00000617336 101 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 Y_RNA.801-201ENST00000619005 101 ntBASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SMC1BQ8NDV3 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.84□□□□□ -1.8
SMC1BQ8NDV3 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 MIR369-201ENST00000362155 70 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 RNU6-827P-201ENST00000365553 106 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 RNU6-72P-201ENST00000384285 79 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 U3.37-201ENST00000408528 213 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 RN7SKP220-201ENST00000410611 288 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 Y_RNA.646-201ENST00000410980 101 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 RNA5SP31-201ENST00000411144 127 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 RNA5SP247-201ENST00000411181 105 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 USP9YP30-201ENST00000430729 455 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 MTCYBP6-201ENST00000441810 138 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 HIGD1AP2-201ENST00000446367 280 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 MTCO3P10-201ENST00000455912 772 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 U8.21-201ENST00000459536 136 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 RPS29P26-201ENST00000477483 171 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 AC097473.1-201ENST00000508142 408 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 RNU6-377P-201ENST00000515965 102 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 Y_RNA.670-201ENST00000516255 105 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 RNU6-1213P-201ENST00000517075 94 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 AC093331.1-201ENST00000521474 169 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 AP004607.1-201ENST00000524456 203 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 TRAV32-201ENST00000553993 340 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 HSPE1P7-201ENST00000604681 321 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 AC004852.3-201ENST00000614131 326 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 XIST_intron.1-201ENST00000619444 68 ntBASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.83□□□□□ -1.8
SMC1BQ8NDV3 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 MTND5P19-201ENST00000424872 1794 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 Y_RNA.238-201ENST00000364441 102 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 MIR548P-201ENST00000408336 84 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 RNU6-325P-201ENST00000411132 105 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 RPL31P12-201ENST00000422587 358 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 AC063976.3-201ENST00000426849 329 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 AL118496.2-201ENST00000448300 230 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 AC006539.3-201ENST00000454258 129 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 Y_RNA.631-201ENST00000459607 101 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 AK3P2-201ENST00000507976 429 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 AP003072.1-201ENST00000531740 145 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 AC026333.2-201ENST00000542164 106 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 AC068831.7-201ENST00000616954 363 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 AL590808.1-201ENST00000618696 141 ntBASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.82□□□□□ -1.8
SMC1BQ8NDV3 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 Y_RNA.2-201ENST00000362330 96 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 Y_RNA.197-201ENST00000364004 102 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 RNU6-270P-201ENST00000364131 105 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 Y_RNA.445-201ENST00000384168 102 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 AL117339.3-201ENST00000418733 162 ntBASIC3.81□□□□□ -1.8
SMC1BQ8NDV3 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms