Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC090517.1-201ENST00000569307 266 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 FAM60BP-201ENST00000578364 658 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 MIR5696-201ENST00000578474 85 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 MIR5701-3-201ENST00000578890 82 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 MIR5701-1-201ENST00000585138 82 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AL390123.1-201ENST00000603216 237 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AL161798.1-201ENST00000604630 131 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-6P-201ENST00000606623 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AC096772.1-201ENST00000609146 564 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 uc_338.1-201ENST00000612113 180 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 MIR5701-2-201ENST00000615634 82 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AC130454.1-201ENST00000622948 401 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 FAM35DP-201ENST00000323387 2712 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 MTND5P6-201ENST00000422338 1798 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 MIR412-201ENST00000362142 91 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-595P-201ENST00000363944 107 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 MIR514A1-201ENST00000385133 98 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-1093P-201ENST00000391194 107 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 S100A11P1-201ENST00000477525 312 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 AL049874.1-201ENST00000489560 388 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 AC097462.2-201ENST00000504623 481 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-397P-201ENST00000516226 104 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 AL355810.1-201ENST00000614629 552 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 AC008725.1-201ENST00000605123 2263 ntBASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
USHBP1Q8N6Y0 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 Y_RNA.60-201ENST00000362831 98 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-384P-201ENST00000364900 104 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 Y_RNA.477-201ENST00000384352 108 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 Y_RNA.478-201ENST00000384358 107 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 MIR521-1-201ENST00000384902 87 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 SNORD56-201ENST00000413522 71 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 EI24P1-201ENST00000416584 867 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 AC079780.1-201ENST00000428259 207 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 AL645939.1-201ENST00000453429 797 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 U8.21-201ENST00000459536 136 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 RPL7P5-201ENST00000471472 736 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 MIR2114-201ENST00000516645 80 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 MIR2276-201ENST00000516886 89 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 AC107934.2-201ENST00000518653 310 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 AC084851.1-201ENST00000529105 249 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 AMZ2P1-203ENST00000565833 850 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 MIR8076-201ENST00000611401 83 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 AC004852.3-201ENST00000614131 326 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 OR4G2P-202ENST00000641004 1759 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 AP001486.2-201ENST00000561652 5113 ntBASIC4.24□□□□□ -1.73
USHBP1Q8N6Y0 MTND5P9-201ENST00000503854 1755 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 RNA5SP322-201ENST00000363617 119 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-611P-201ENST00000384276 104 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 Y_RNA.471-201ENST00000384312 102 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 MIR628-201ENST00000385229 95 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 AC092573.2-201ENST00000434546 243 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 NDUFB1P2-201ENST00000449477 176 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 MTND4LP30-201ENST00000454092 297 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 RN7SKP40-201ENST00000517211 242 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 IGKV2D-23-201ENST00000518179 286 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 AC109329.1-201ENST00000518744 317 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 AP003733.2-201ENST00000529409 171 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 AC026470.2-201ENST00000561492 181 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 uc_338.32-201ENST00000615087 172 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 MIR4727-201ENST00000622232 55 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 130.6 ms