Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL162395.1-201ENST00000457882 422 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 SNORD60.2-201ENST00000516883 86 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 RNU6-1183P-201ENST00000517054 60 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 RN7SKP258-201ENST00000517151 304 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 AC137800.2-201ENST00000574375 120 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 AC093788.1-201ENST00000609356 927 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 AC021506.2-201ENST00000612354 169 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 AC010133.1-201ENST00000615809 842 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 RNU6-1010P-201ENST00000362757 107 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 RNA5SP264-201ENST00000363115 107 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 RNU6-529P-201ENST00000363383 104 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 RNY1P8-201ENST00000383970 114 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 MIR32-201ENST00000384965 70 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 BX664727.1-201ENST00000416024 466 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 RAC1P8-201ENST00000427086 527 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 AC092473.1-201ENST00000441098 221 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 TOMM22P6-201ENST00000465035 409 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 SUMO2P18-201ENST00000518873 252 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 UTP23-205ENST00000520733 369 ntTSL 3 BASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 BNIP3P6-201ENST00000549284 499 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 AC126365.2-201ENST00000580630 379 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 MIR4781-201ENST00000585250 76 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 AL020997.3-201ENST00000602843 359 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 AC091805.2-201ENST00000603848 235 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 MIR6513-201ENST00000621188 64 ntBASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC-0.29□□□□□ -2.46
LINC00643Q86TS7 DLEU2_6.3-201ENST00000340052 136 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 SNORD114-9-201ENST00000364370 72 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 RNU6-163P-201ENST00000384396 106 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 TAF13P2-201ENST00000416876 286 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AC011233.1-201ENST00000422812 283 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 RPL32P14-201ENST00000463196 378 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AC023194.1-201ENST00000493084 308 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AC093534.1-201ENST00000504977 132 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AC118282.2-201ENST00000508739 374 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AP003355.1-201ENST00000518956 587 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 MIR4290-201ENST00000583807 95 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AL158827.2-201ENST00000602494 330 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AL355816.2-201ENST00000610049 647 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AL118556.2-201ENST00000614375 824 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 DLEU2_6.2-201ENST00000620994 136 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AC007792.1-201ENST00000623023 402 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AL691447.3-201ENST00000635020 330 ntBASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC-0.3□□□□□ -2.46
LINC00643Q86TS7 CASC19-280ENST00000642102 1351 ntBASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 SNRPEP3-201ENST00000338402 276 ntBASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 SNORA42.1-201ENST00000363515 137 ntBASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 RNU1-93P-201ENST00000364704 169 ntBASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 MIR29B2-201ENST00000385055 81 ntBASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 MIR140-201ENST00000385282 100 ntBASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 AL592310.1-201ENST00000414330 671 ntBASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 COX6CP10-201ENST00000416832 224 ntBASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 AC244098.3-201ENST00000424803 96 ntBASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 SNRPGP12-201ENST00000449481 213 ntBASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 AL157786.1-207ENST00000627771 695 ntBASIC-0.31□□□□□ -2.46
LINC00643Q86TS7 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 RNU6-1123P-201ENST00000362347 106 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 RNU6-655P-201ENST00000362858 107 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 RNU6-1019P-201ENST00000364424 107 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 USP9YP34-201ENST00000453983 808 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 RNU6-333P-201ENST00000459117 107 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 RNU7-90P-201ENST00000459216 62 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 RNU7-21P-201ENST00000459430 62 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 TRMT112P2-201ENST00000512910 132 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 AP003327.1-201ENST00000529684 127 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 NIFKP8-201ENST00000560500 874 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 LARP7P2-201ENST00000575306 125 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 AC011195.1-201ENST00000578177 177 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 AL354950.1-201ENST00000614150 568 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 AC013470.4-201ENST00000619978 986 ntBASIC-0.32□□□□□ -2.46
LINC00643Q86TS7 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 AC092268.1-201ENST00000342691 405 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 RNA5SP214-201ENST00000363378 118 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 Y_RNA.500-201ENST00000384466 111 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 RAP1BP3-201ENST00000407180 549 ntBASIC-0.33□□□□□ -2.46
LINC00643Q86TS7 UBE2V1P10-201ENST00000414685 269 ntBASIC-0.33□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms