Protein–RNA interactions for Protein: Q6ZNE9

RUFY4, RUN and FYVE domain-containing protein 4, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY4Q6ZNE9 AL353746.1-201ENST00000566293 6881 ntBASIC4.1□□□□□ -1.75
RUFY4Q6ZNE9 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
RUFY4Q6ZNE9 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
RUFY4Q6ZNE9 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
RUFY4Q6ZNE9 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 SNORD9-201ENST00000362566 104 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 Y_RNA.123-201ENST00000363338 102 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 Y_RNA.188-201ENST00000363952 111 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 RNU6-505P-201ENST00000384427 107 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 RNVU1-14-201ENST00000384770 164 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 MIR490-201ENST00000384865 128 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 MIR218-2-201ENST00000385006 110 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 SNORA12.2-201ENST00000391040 156 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 RPL21P1-201ENST00000399532 476 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 MIR190B-201ENST00000401119 79 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 EIF1AXP1-201ENST00000419267 435 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 AC125238.1-201ENST00000448842 249 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 AC008011.1-201ENST00000545989 227 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 AC060766.3-201ENST00000591442 263 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 AL390123.1-201ENST00000603216 237 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 BRDTP1-201ENST00000605735 677 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 AC107871.2-201ENST00000612894 502 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 MIR7975-201ENST00000619350 68 ntBASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.09□□□□□ -1.75
RUFY4Q6ZNE9 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.09□□□□□ -1.76
RUFY4Q6ZNE9 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.76
RUFY4Q6ZNE9 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 RNU6-713P-201ENST00000384761 107 ntBASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 RNU7-169P-201ENST00000459456 61 ntBASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 RPS27AP10-201ENST00000496103 208 ntBASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 Y_RNA.668-201ENST00000516233 93 ntBASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 MIR3609-201ENST00000582661 80 ntBASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 AL159153.1-201ENST00000619688 317 ntBASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 AC024581.2-201ENST00000619986 252 ntBASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 MIR8062-201ENST00000621515 85 ntBASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
RUFY4Q6ZNE9 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 TNPO1P3-201ENST00000436471 2662 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 RNY3P11-201ENST00000364153 102 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 U3.13-201ENST00000364804 214 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 RNU4-9P-201ENST00000364951 139 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 RNU1-100P-201ENST00000365255 165 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 SNORA51.11-201ENST00000384442 131 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 RNA5SP424-201ENST00000390988 115 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 RPS4XP3-201ENST00000398541 413 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 AL591034.1-201ENST00000407447 340 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 RNU6-847P-201ENST00000411115 108 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 CBX3P6-201ENST00000430257 527 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 RPL26P9-201ENST00000457466 433 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 RNA5SP310-201ENST00000459084 116 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 RN7SKP83-201ENST00000516512 178 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 SNORA70.18-201ENST00000516696 98 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 Y_RNA.706-201ENST00000516933 99 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 AC109329.1-201ENST00000518744 317 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 AC016256.1-201ENST00000547971 354 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 MIR3200-201ENST00000580767 85 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 MIR3668-201ENST00000582138 75 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 MIR6076-201ENST00000617521 113 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 AC241585.2-209ENST00000638217 143 ntBASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
RUFY4Q6ZNE9 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
RUFY4Q6ZNE9 AC009541.1-201ENST00000438279 2662 ntBASIC4.06□□□□□ -1.76
RUFY4Q6ZNE9 ZNF72P-201ENST00000425869 1908 ntBASIC4.06□□□□□ -1.76
RUFY4Q6ZNE9 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
RUFY4Q6ZNE9 RNU6-874P-201ENST00000362390 105 ntBASIC4.06□□□□□ -1.76
RUFY4Q6ZNE9 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.06□□□□□ -1.76
RUFY4Q6ZNE9 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.06□□□□□ -1.76
RUFY4Q6ZNE9 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.06□□□□□ -1.76
RUFY4Q6ZNE9 OR2AQ1P-201ENST00000451972 200 ntBASIC4.06□□□□□ -1.76
RUFY4Q6ZNE9 AC097462.2-201ENST00000504623 481 ntBASIC4.06□□□□□ -1.76
RUFY4Q6ZNE9 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC4.06□□□□□ -1.76
RUFY4Q6ZNE9 SNORA25.11-201ENST00000515935 105 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 202.7 ms