Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TUG1_2.1-201ENST00000614234 87 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 MIR8074-201ENST00000615081 81 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 SNORD14D-201ENST00000384390 87 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 EIF4EP2-201ENST00000422816 654 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 AC008267.5-201ENST00000424928 265 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 PRELID3BP1-201ENST00000457142 540 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 NAP1L1P1-201ENST00000524793 1063 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 MIR4422-201ENST00000581938 83 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 AC005786.1-201ENST00000588553 154 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 VN1R83P-201ENST00000595685 445 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 AC016925.2-201ENST00000605108 242 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 AC013470.4-201ENST00000619978 986 ntBASIC1.04□□□□□ -2.24
CCDC88AQ3V6T2 SNORD114-2-201ENST00000363953 78 ntBASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AC119751.3-201ENST00000399720 670 ntBASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 OR2A41P-201ENST00000473586 105 ntBASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AC018630.3-201ENST00000542637 96 ntBASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AL022345.1-201ENST00000607292 135 ntBASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AC092574.1-201ENST00000609771 420 ntBASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AC023158.2-201ENST00000614876 543 ntBASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AC007742.2-201ENST00000618226 398 ntBASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 AL158163.2-201ENST00000619110 700 ntBASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 Z99571.1-201ENST00000636677 394 ntBASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.03□□□□□ -2.24
CCDC88AQ3V6T2 RNU6-546P-201ENST00000383991 107 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 RNU2-62P-201ENST00000410868 191 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 OR9R1P-201ENST00000412200 877 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 JTBP1-201ENST00000441314 247 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 AP001324.2-201ENST00000461163 319 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 AC010409.1-201ENST00000487382 476 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 AC018868.1-201ENST00000491307 315 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 AC109927.2-201ENST00000506416 303 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 SNORA4.4-201ENST00000515921 135 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 RNY4P37-201ENST00000516225 96 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 RNU6-1315P-201ENST00000517187 99 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 U1.36-201ENST00000620684 176 ntBASIC1.03□□□□□ -2.25
CCDC88AQ3V6T2 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 UBE2Q2P1-202ENST00000354771 883 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 SNORA25.8-201ENST00000364831 128 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 SNORD1A-201ENST00000364968 72 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 SMIM11P1-201ENST00000369586 178 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 AL022238.1-201ENST00000442557 355 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 MTCO1P27-201ENST00000448269 226 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 CECR9-201ENST00000453421 199 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 MTND1P16-201ENST00000465177 898 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 PTP4A1P4-201ENST00000512479 322 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 COPS8P3-201ENST00000526024 482 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 AL161798.1-201ENST00000604630 131 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 AL365204.3-201ENST00000612448 685 ntBASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC1.02□□□□□ -2.25
CCDC88AQ3V6T2 MIR218-1-201ENST00000384999 110 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 RNA5SP390-201ENST00000410191 113 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 BTF3L4P3-201ENST00000418879 476 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 AC112220.3-201ENST00000605502 502 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 AC099785.1-201ENST00000605697 437 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 RNU6-944P-201ENST00000364023 107 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 RNU6-487P-201ENST00000365430 104 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 MTCO1P17-201ENST00000411522 491 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 RPS27P16-201ENST00000425758 201 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 AC008507.2-201ENST00000588402 1176 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 AL606834.3-201ENST00000602615 496 ntBASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC88AQ3V6T2 AL512506.1-201ENST00000613918 449 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms