Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MTND4P27-201ENST00000450813 1354 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 Z83843.1-201ENST00000604070 3685 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 MIR369-201ENST00000362155 70 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 Y_RNA.2-201ENST00000362330 96 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-428P-201ENST00000362942 107 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 Y_RNA.112-201ENST00000363250 102 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-105P-201ENST00000363909 104 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-1280P-201ENST00000365211 107 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 AL591034.2-201ENST00000402839 359 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 RNA5SP229-201ENST00000410809 99 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 RN7SL504P-201ENST00000494496 287 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 AP005902.1-201ENST00000521358 186 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 SNRPGP18-201ENST00000553000 214 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 BNIP3P16-201ENST00000589779 534 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 AC078795.3-201ENST00000602913 472 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
PTCHD3Q3KNS1 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 ADAM3A-203ENST00000461344 2157 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-336P-201ENST00000364891 107 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-890P-201ENST00000384121 107 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 AL357075.1-201ENST00000404107 726 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 Z82205.1-201ENST00000428456 297 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 AC011816.1-201ENST00000441346 546 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 AL137792.2-201ENST00000443484 235 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 AC096576.1-201ENST00000489014 359 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 AC090096.1-201ENST00000489168 390 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-612P-201ENST00000516909 102 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 AC022634.1-201ENST00000520765 532 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 AC104027.1-201ENST00000521887 300 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 AC006199.1-201ENST00000548728 219 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 MIR5680-201ENST00000577577 84 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 MIR3171-201ENST00000584270 74 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 uc_338.22-201ENST00000622722 187 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 AC073476.4-201ENST00000628409 72 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 GABRG2-229ENST00000641017 3628 ntBASIC3.17□□□□□ -1.9
PTCHD3Q3KNS1 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-1059P-201ENST00000363752 98 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 Y_RNA.202-201ENST00000364083 110 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 Y_RNA.445-201ENST00000384168 102 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 Y_RNA.473-201ENST00000384333 102 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 MIR128-1-201ENST00000384921 82 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 Z92545.1-201ENST00000411782 234 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 EIF4EP2-201ENST00000422816 654 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AL591043.1-201ENST00000432461 424 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 Z75741.1-201ENST00000446793 314 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 SMURF2P1-201ENST00000514992 481 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-470P-201ENST00000515954 104 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 SCARNA15.1-201ENST00000516384 125 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 SNORD19.2-201ENST00000516978 73 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 SCARNA20.6-201ENST00000517251 106 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AP003072.1-201ENST00000531740 145 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 ELOCP31-201ENST00000540463 467 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AC109446.1-201ENST00000566172 220 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 MIR4273-201ENST00000582824 84 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AC012493.2-201ENST00000595083 291 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AC022432.1-201ENST00000595739 310 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AL356157.2-201ENST00000605122 111 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AC005000.2-201ENST00000605468 310 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 YPEL5P2-201ENST00000605553 359 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AC011890.2-201ENST00000613393 294 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AC090617.7-201ENST00000623952 126 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AC092608.2-201ENST00000624427 218 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 HAUS6P2-201ENST00000433254 2404 ntBASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.16□□□□□ -1.9
PTCHD3Q3KNS1 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.15□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 204.7 ms