Protein–RNA interactions for Protein: Q15393

SF3B3, Splicing factor 3B subunit 3, humanhuman

Known RBP Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3Q15393 RNU6-607P-201ENST00000411283 108 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.55□□□□□ -1.84
SF3B3Q15393 AL592045.1-201ENST00000429867 352 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 AL645568.3-201ENST00000433683 316 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 MTND5P22-201ENST00000458380 195 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 RPL7P5-201ENST00000471472 736 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 RPL7P42-201ENST00000481005 679 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SF3B3Q15393 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.55□□□□□ -1.84
SF3B3Q15393 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.55□□□□□ -1.84
SF3B3Q15393 AC004832.5-201ENST00000608677 401 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 AL161423.1-201ENST00000613700 262 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 AC092608.2-201ENST00000624427 218 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 Z99571.1-201ENST00000636677 394 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 OR4G2P-202ENST00000641004 1759 ntBASIC3.55□□□□□ -1.84
SF3B3Q15393 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SF3B3Q15393 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
SF3B3Q15393 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
SF3B3Q15393 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
SF3B3Q15393 MTND4P1-201ENST00000457501 1466 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
SF3B3Q15393 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.54□□□□□ -1.84
SF3B3Q15393 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SF3B3Q15393 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.54□□□□□ -1.84
SF3B3Q15393 RNA5SP383-201ENST00000362934 120 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 Y_RNA.252-201ENST00000364556 101 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 AC117470.1-201ENST00000381974 330 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 Y_RNA.463-201ENST00000384271 102 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 RNU2-3P-201ENST00000410144 191 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 AL592148.1-201ENST00000413568 445 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 CYCSP33-201ENST00000414485 327 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 MCFD2P1-201ENST00000417812 300 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 AL353621.1-201ENST00000418219 243 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 AC245291.1-201ENST00000419501 328 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 UBE2V1P4-201ENST00000425374 344 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 AL358176.2-201ENST00000425769 204 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.54□□□□□ -1.84
SF3B3Q15393 RN7SL442P-201ENST00000473804 320 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 RPS15AP34-201ENST00000487776 387 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 AC021146.2-201ENST00000504736 556 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.54□□□□□ -1.84
SF3B3Q15393 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.54□□□□□ -1.84
SF3B3Q15393 SNORA31.1-201ENST00000515993 133 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 SNORA31.5-201ENST00000516190 133 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 SNORA31.8-201ENST00000516327 108 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 Y_RNA.720-201ENST00000517166 92 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.54□□□□□ -1.84
SF3B3Q15393 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.54□□□□□ -1.84
SF3B3Q15393 AC098826.3-201ENST00000603823 466 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 AC107294.1-201ENST00000609524 467 ntBASIC3.54□□□□□ -1.84
SF3B3Q15393 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SF3B3Q15393 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
SF3B3Q15393 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SF3B3Q15393 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.53□□□□□ -1.84
SF3B3Q15393 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SF3B3Q15393 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
SF3B3Q15393 RNU6-1167P-201ENST00000363227 94 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 U3.6-201ENST00000363622 211 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 RNU6-512P-201ENST00000364438 103 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 RNU6-1329P-201ENST00000365664 107 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 RNU6-1032P-201ENST00000384100 107 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 RNU6-1105P-201ENST00000384774 107 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 MIR9-1-201ENST00000385198 89 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.53□□□□□ -1.84
SF3B3Q15393 USP9YP30-201ENST00000430729 455 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.53□□□□□ -1.84
SF3B3Q15393 AL135752.1-201ENST00000479477 471 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.53□□□□□ -1.84
SF3B3Q15393 RN7SL633P-201ENST00000488974 297 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AC022493.1-201ENST00000492984 337 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AC008716.1-201ENST00000511084 513 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 SCARNA15.2-201ENST00000516409 127 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 RNU6-1315P-201ENST00000517187 99 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AC069113.1-201ENST00000517763 267 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AC009902.1-201ENST00000519351 183 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
SF3B3Q15393 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.53□□□□□ -1.84
SF3B3Q15393 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.53□□□□□ -1.84
SF3B3Q15393 MED28P6-201ENST00000558776 231 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AC011494.1-201ENST00000596454 237 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AL161798.1-201ENST00000604630 131 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 ELOCP5-201ENST00000604924 333 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AC011890.2-201ENST00000613393 294 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AC083806.3-201ENST00000614016 455 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AC091925.1-201ENST00000623204 462 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AL512643.1-201ENST00000635735 524 ntBASIC3.53□□□□□ -1.84
SF3B3Q15393 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.53□□□□□ -1.84
SF3B3Q15393 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.53□□□□□ -1.84
SF3B3Q15393 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
SF3B3Q15393 SNORA14A-201ENST00000364773 135 ntBASIC3.52□□□□□ -1.85
SF3B3Q15393 RNU6-306P-201ENST00000384617 107 ntBASIC3.52□□□□□ -1.85
SF3B3Q15393 RNU2-52P-201ENST00000410680 190 ntBASIC3.52□□□□□ -1.85
SF3B3Q15393 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.52□□□□□ -1.85
SF3B3Q15393 HMGB1P9-201ENST00000429856 646 ntBASIC3.52□□□□□ -1.85
SF3B3Q15393 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.52□□□□□ -1.85
SF3B3Q15393 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.52□□□□□ -1.85
SF3B3Q15393 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.52□□□□□ -1.85
SF3B3Q15393 SNORD109B-201ENST00000458961 67 ntBASIC3.52□□□□□ -1.85
SF3B3Q15393 SNORD109A-201ENST00000459128 67 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms