Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
RNF4P78317 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.84□□□□□ -1.79
RNF4P78317 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
RNF4P78317 RNU6-1141P-201ENST00000364520 107 ntBASIC3.84□□□□□ -1.79
RNF4P78317 AL033519.2-201ENST00000403958 392 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RNA5SP317-201ENST00000410176 116 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RNA5SP311-201ENST00000411290 116 ntBASIC3.84□□□□□ -1.79
RNF4P78317 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.84□□□□□ -1.79
RNF4P78317 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.84□□□□□ -1.79
RNF4P78317 AL136097.1-201ENST00000456945 913 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RPL21P104-201ENST00000464143 478 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RPS26P28-201ENST00000470806 348 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RPL30P12-201ENST00000474666 353 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RPL26P26-201ENST00000480251 434 ntBASIC3.84□□□□□ -1.79
RNF4P78317 AP001025.1-201ENST00000486139 332 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RNA5SP315-201ENST00000516340 116 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RN7SKP49-201ENST00000516675 260 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RNU7-110P-201ENST00000516891 62 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RNA5SP312-201ENST00000517068 116 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RNU6-58P-201ENST00000517143 103 ntBASIC3.84□□□□□ -1.79
RNF4P78317 RN7SKP40-201ENST00000517211 242 ntBASIC3.84□□□□□ -1.79
RNF4P78317 AC007224.1-201ENST00000564410 144 ntBASIC3.84□□□□□ -1.79
RNF4P78317 AL356157.2-201ENST00000605122 111 ntBASIC3.84□□□□□ -1.79
RNF4P78317 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.84□□□□□ -1.79
RNF4P78317 MIR7154-201ENST00000620673 73 ntBASIC3.84□□□□□ -1.79
RNF4P78317 AC112484.5-201ENST00000624189 228 ntBASIC3.84□□□□□ -1.79
RNF4P78317 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.84□□□□□ -1.79
RNF4P78317 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.84□□□□□ -1.8
RNF4P78317 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.84□□□□□ -1.8
RNF4P78317 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.83□□□□□ -1.8
RNF4P78317 AC135776.4-201ENST00000624300 1904 ntBASIC3.83□□□□□ -1.8
RNF4P78317 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
RNF4P78317 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
RNF4P78317 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
RNF4P78317 Y_RNA.83-201ENST00000363005 113 ntBASIC3.83□□□□□ -1.8
RNF4P78317 RNU6-281P-201ENST00000384212 103 ntBASIC3.83□□□□□ -1.8
RNF4P78317 RNU6-21P-201ENST00000384710 107 ntBASIC3.83□□□□□ -1.8
RNF4P78317 SNORA53-201ENST00000391141 249 ntBASIC3.83□□□□□ -1.8
RNF4P78317 MIR548M-201ENST00000408260 86 ntBASIC3.83□□□□□ -1.8
RNF4P78317 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.83□□□□□ -1.8
RNF4P78317 BPY2DP-201ENST00000422208 265 ntBASIC3.83□□□□□ -1.8
RNF4P78317 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.83□□□□□ -1.8
RNF4P78317 AC006011.1-201ENST00000442758 349 ntBASIC3.83□□□□□ -1.8
RNF4P78317 AL162151.2-201ENST00000448875 158 ntBASIC3.83□□□□□ -1.8
RNF4P78317 RNU7-170P-201ENST00000459303 61 ntBASIC3.83□□□□□ -1.8
RNF4P78317 AC073901.1-201ENST00000462471 408 ntBASIC3.83□□□□□ -1.8
RNF4P78317 AC084357.1-201ENST00000473404 255 ntBASIC3.83□□□□□ -1.8
RNF4P78317 ACA59.2-201ENST00000517061 156 ntBASIC3.83□□□□□ -1.8
RNF4P78317 MIR2116-201ENST00000517221 80 ntBASIC3.83□□□□□ -1.8
RNF4P78317 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.83□□□□□ -1.8
RNF4P78317 AC016256.1-201ENST00000547971 354 ntBASIC3.83□□□□□ -1.8
RNF4P78317 AC006199.1-201ENST00000548728 219 ntBASIC3.83□□□□□ -1.8
RNF4P78317 AL137100.2-201ENST00000555786 315 ntBASIC3.83□□□□□ -1.8
RNF4P78317 AC021739.1-201ENST00000559631 174 ntBASIC3.83□□□□□ -1.8
RNF4P78317 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
RNF4P78317 HMGN2P15-201ENST00000585707 270 ntBASIC3.83□□□□□ -1.8
RNF4P78317 SNORD113-5-201ENST00000607261 78 ntBASIC3.83□□□□□ -1.8
RNF4P78317 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.83□□□□□ -1.8
RNF4P78317 AC127459.3-201ENST00000624328 466 ntBASIC3.83□□□□□ -1.8
RNF4P78317 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.83□□□□□ -1.8
RNF4P78317 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
RNF4P78317 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
RNF4P78317 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.83□□□□□ -1.8
RNF4P78317 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
RNF4P78317 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
RNF4P78317 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
RNF4P78317 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
RNF4P78317 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
RNF4P78317 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
RNF4P78317 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
RNF4P78317 AC090740.1-201ENST00000623193 2262 ntBASIC3.82□□□□□ -1.8
RNF4P78317 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
RNF4P78317 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
RNF4P78317 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
RNF4P78317 Y_RNA.44-201ENST00000362676 108 ntBASIC3.82□□□□□ -1.8
RNF4P78317 Y_RNA.76-201ENST00000362931 109 ntBASIC3.82□□□□□ -1.8
RNF4P78317 RNA5SP130-201ENST00000364431 114 ntBASIC3.82□□□□□ -1.8
RNF4P78317 RNU1-13P-201ENST00000384499 162 ntBASIC3.82□□□□□ -1.8
RNF4P78317 U3.19-201ENST00000390893 196 ntBASIC3.82□□□□□ -1.8
RNF4P78317 RNU6-159P-201ENST00000391080 106 ntBASIC3.82□□□□□ -1.8
RNF4P78317 RN7SKP61-201ENST00000410642 295 ntBASIC3.82□□□□□ -1.8
RNF4P78317 Y_RNA.793-201ENST00000411222 111 ntBASIC3.82□□□□□ -1.8
RNF4P78317 AL356095.1-201ENST00000417217 199 ntBASIC3.82□□□□□ -1.8
RNF4P78317 AC138623.1-201ENST00000418060 216 ntBASIC3.82□□□□□ -1.8
RNF4P78317 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.82□□□□□ -1.8
RNF4P78317 RPL39P29-201ENST00000447779 157 ntBASIC3.82□□□□□ -1.8
RNF4P78317 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.82□□□□□ -1.8
RNF4P78317 AL138752.1-201ENST00000452964 351 ntBASIC3.82□□□□□ -1.8
RNF4P78317 RPS4XP13-201ENST00000483219 789 ntBASIC3.82□□□□□ -1.8
RNF4P78317 PPBPP1-201ENST00000510807 373 ntBASIC3.82□□□□□ -1.8
RNF4P78317 RNU6-567P-201ENST00000516746 107 ntBASIC3.82□□□□□ -1.8
RNF4P78317 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.82□□□□□ -1.8
RNF4P78317 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.82□□□□□ -1.8
RNF4P78317 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.82□□□□□ -1.8
RNF4P78317 NACAP3-201ENST00000552100 481 ntBASIC3.82□□□□□ -1.8
RNF4P78317 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.82□□□□□ -1.8
RNF4P78317 MIR432-201ENST00000606207 94 ntBASIC3.82□□□□□ -1.8
RNF4P78317 MIR6867-201ENST00000610636 67 ntBASIC3.82□□□□□ -1.8
RNF4P78317 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.82□□□□□ -1.8
RNF4P78317 MIR7151-201ENST00000617477 60 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms