Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.22□□□□□ -1.89
COPB1P53618 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.22□□□□□ -1.89
COPB1P53618 AC011494.1-201ENST00000596454 237 ntBASIC3.22□□□□□ -1.89
COPB1P53618 AL645944.1-201ENST00000603857 493 ntBASIC3.22□□□□□ -1.89
COPB1P53618 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COPB1P53618 AC027309.3-201ENST00000623419 351 ntBASIC3.22□□□□□ -1.89
COPB1P53618 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.22□□□□□ -1.89
COPB1P53618 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
COPB1P53618 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COPB1P53618 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
COPB1P53618 MTND4P27-201ENST00000450813 1354 ntBASIC3.22□□□□□ -1.89
COPB1P53618 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.22□□□□□ -1.89
COPB1P53618 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COPB1P53618 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COPB1P53618 RPL9P7-201ENST00000330965 580 ntBASIC3.21□□□□□ -1.9
COPB1P53618 Y_RNA.31-201ENST00000362574 102 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-37P-201ENST00000362692 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 Y_RNA.112-201ENST00000363250 102 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-11P-201ENST00000364234 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-7-201ENST00000364784 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-8-201ENST00000365467 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-25P-201ENST00000383873 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-1-201ENST00000383898 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-48P-201ENST00000384161 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-36P-201ENST00000384172 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-4P-201ENST00000384205 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-5P-201ENST00000384238 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-3P-201ENST00000384314 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-16P-201ENST00000384385 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-15P-201ENST00000384534 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-2-201ENST00000384627 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-29P-201ENST00000384637 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-9-201ENST00000384776 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-33P-201ENST00000384793 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 MIR181A2-201ENST00000384863 110 ntBASIC3.21□□□□□ -1.9
COPB1P53618 MIR10A-201ENST00000385043 110 ntBASIC3.21□□□□□ -1.9
COPB1P53618 AL445529.1-201ENST00000398713 389 ntBASIC3.21□□□□□ -1.9
COPB1P53618 AL590004.2-201ENST00000404787 371 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RN7SKP220-201ENST00000410611 288 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-293P-201ENST00000411259 106 ntBASIC3.21□□□□□ -1.9
COPB1P53618 AL030996.1-201ENST00000411430 235 ntBASIC3.21□□□□□ -1.9
COPB1P53618 PMCHL1-202ENST00000423102 261 ntBASIC3.21□□□□□ -1.9
COPB1P53618 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.21□□□□□ -1.9
COPB1P53618 AC236972.1-201ENST00000433225 199 ntBASIC3.21□□□□□ -1.9
COPB1P53618 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.21□□□□□ -1.9
COPB1P53618 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.21□□□□□ -1.9
COPB1P53618 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.21□□□□□ -1.9
COPB1P53618 RPL27AP5-201ENST00000469428 449 ntBASIC3.21□□□□□ -1.9
COPB1P53618 HMGN1P10-201ENST00000474557 553 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RPL7P42-201ENST00000481005 679 ntBASIC3.21□□□□□ -1.9
COPB1P53618 AC090096.1-201ENST00000489168 390 ntBASIC3.21□□□□□ -1.9
COPB1P53618 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COPB1P53618 AC022634.1-201ENST00000520765 532 ntBASIC3.21□□□□□ -1.9
COPB1P53618 HMGB1P14-201ENST00000557424 591 ntBASIC3.21□□□□□ -1.9
COPB1P53618 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.21□□□□□ -1.9
COPB1P53618 MIR4506-201ENST00000584693 77 ntBASIC3.21□□□□□ -1.9
COPB1P53618 AC078795.3-201ENST00000602913 472 ntBASIC3.21□□□□□ -1.9
COPB1P53618 RNU6-6P-201ENST00000606623 107 ntBASIC3.21□□□□□ -1.9
COPB1P53618 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.21□□□□□ -1.9
COPB1P53618 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.21□□□□□ -1.9
COPB1P53618 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
COPB1P53618 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
COPB1P53618 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
COPB1P53618 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.21□□□□□ -1.9
COPB1P53618 AC022336.2-201ENST00000568966 2538 ntBASIC3.21□□□□□ -1.9
COPB1P53618 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.21□□□□□ -1.9
COPB1P53618 MTND5P7-201ENST00000413558 1798 ntBASIC3.2□□□□□ -1.9
COPB1P53618 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COPB1P53618 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
COPB1P53618 RNU6-778P-201ENST00000363269 103 ntBASIC3.2□□□□□ -1.9
COPB1P53618 Z98749.2-208ENST00000381646 500 ntBASIC3.2□□□□□ -1.9
COPB1P53618 RNU6-890P-201ENST00000384121 107 ntBASIC3.2□□□□□ -1.9
COPB1P53618 RNU6-842P-201ENST00000384269 107 ntBASIC3.2□□□□□ -1.9
COPB1P53618 Y_RNA.500-201ENST00000384466 111 ntBASIC3.2□□□□□ -1.9
COPB1P53618 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
COPB1P53618 UBA52P6-201ENST00000399822 382 ntBASIC3.2□□□□□ -1.9
COPB1P53618 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.2□□□□□ -1.9
COPB1P53618 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.2□□□□□ -1.9
COPB1P53618 AL078601.1-201ENST00000444542 271 ntBASIC3.2□□□□□ -1.9
COPB1P53618 FTH1P25-201ENST00000447665 469 ntBASIC3.2□□□□□ -1.9
COPB1P53618 RPL23AP45-201ENST00000476406 468 ntBASIC3.2□□□□□ -1.9
COPB1P53618 AL163540.1-201ENST00000485382 386 ntBASIC3.2□□□□□ -1.9
COPB1P53618 AC113155.1-201ENST00000511141 769 ntBASIC3.2□□□□□ -1.9
COPB1P53618 AC008885.1-201ENST00000514930 301 ntBASIC3.2□□□□□ -1.9
COPB1P53618 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.2□□□□□ -1.9
COPB1P53618 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.2□□□□□ -1.9
COPB1P53618 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.2□□□□□ -1.9
COPB1P53618 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COPB1P53618 SNRPGP18-201ENST00000553000 214 ntBASIC3.2□□□□□ -1.9
COPB1P53618 TRAV32-201ENST00000553993 340 ntBASIC3.2□□□□□ -1.9
COPB1P53618 CYCSP39-201ENST00000565821 309 ntBASIC3.2□□□□□ -1.9
COPB1P53618 CPDP1-201ENST00000579660 283 ntBASIC3.2□□□□□ -1.9
COPB1P53618 AC019193.3-201ENST00000609144 554 ntBASIC3.2□□□□□ -1.9
COPB1P53618 AC090115.4-201ENST00000609970 188 ntBASIC3.2□□□□□ -1.9
COPB1P53618 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.2□□□□□ -1.9
COPB1P53618 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COPB1P53618 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
COPB1P53618 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COPB1P53618 ZNF807-201ENST00000328088 1707 ntBASIC3.19□□□□□ -1.9
COPB1P53618 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms