Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC005609.4-201ENST00000625071 447 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
TNFRSF4P43489 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.28□□□□□ -2.05
TNFRSF4P43489 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.27□□□□□ -2.05
TNFRSF4P43489 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 RNU6-371P-201ENST00000364283 108 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 SNORD37.1-201ENST00000390968 65 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 RNU6-780P-201ENST00000391030 104 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 RNU6-550P-201ENST00000391057 101 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 RNU6-1158P-201ENST00000391167 107 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AF274854.1-201ENST00000413236 615 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 HMGN2P3-201ENST00000433603 273 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AL606489.2-201ENST00000433886 234 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AL596276.1-201ENST00000434465 418 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 HMGN2P5-201ENST00000436882 273 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 AL356010.1-201ENST00000456364 102 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 AP003034.1-201ENST00000534621 422 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 MTATP6P3-201ENST00000581686 676 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 RPS15AP11-201ENST00000594193 385 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AC008945.2-201ENST00000606056 604 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AL627309.6-201ENST00000606857 840 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AP001596.2-201ENST00000608410 312 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AC017083.3-201ENST00000609955 700 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 AL354950.2-201ENST00000617939 290 ntBASIC2.27□□□□□ -2.05
TNFRSF4P43489 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.27□□□□□ -2.05
TNFRSF4P43489 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
TNFRSF4P43489 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
TNFRSF4P43489 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
TNFRSF4P43489 RNU6-1322P-201ENST00000364309 107 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 RNA5SP125-201ENST00000364843 120 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 RNU6-996P-201ENST00000365438 107 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 SNORA64-201ENST00000384674 134 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 AL590002.1-201ENST00000406554 418 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 MIR1289-2-201ENST00000408360 111 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 SNORA11.4-201ENST00000408823 129 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 RN7SKP32-201ENST00000410167 303 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 HMGN2P35-201ENST00000412164 270 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 UBE2V1P10-201ENST00000414685 269 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 AC138623.1-201ENST00000418060 216 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 MTCYBP8-201ENST00000422855 651 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 SUMO1P4-201ENST00000429430 302 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 AL365400.1-201ENST00000431854 640 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 CALM1P1-201ENST00000442082 433 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 DYNLL1P5-201ENST00000467158 270 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 RPS27AP9-201ENST00000477681 438 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 RPL21P99-201ENST00000480369 423 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 Y_RNA.687-201ENST00000516558 91 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 AL512360.1-201ENST00000555346 234 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 AL133241.1-201ENST00000556832 487 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 MIR4703-201ENST00000577728 79 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 MIR5194-201ENST00000582634 120 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 BNIP3P30-201ENST00000601184 574 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 AC092954.2-201ENST00000609103 430 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 MIR6132-201ENST00000622083 109 ntBASIC2.26□□□□□ -2.05
TNFRSF4P43489 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.26□□□□□ -2.05
TNFRSF4P43489 MAPK10-266ENST00000641066 6555 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.25□□□□□ -2.05
TNFRSF4P43489 HAUS6P2-201ENST00000433254 2404 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 RNU6-942P-201ENST00000363002 107 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 SNORD114-19-201ENST00000363072 75 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 RNU6-384P-201ENST00000364900 104 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 Y_RNA.481-201ENST00000384373 102 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 RAP1BP3-201ENST00000407180 549 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 RNU2-63P-201ENST00000410792 194 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 RNU4-46P-201ENST00000410818 138 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 Y_RNA.619-201ENST00000410951 90 ntBASIC2.25□□□□□ -2.05
TNFRSF4P43489 PGBD4P6-201ENST00000421501 610 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 165.9 ms