Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.2□□□□□ -2.38
CUX1P39880 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC0.2□□□□□ -2.38
CUX1P39880 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC0.2□□□□□ -2.38
CUX1P39880 AP001180.6-201ENST00000584918 159 ntBASIC0.2□□□□□ -2.38
CUX1P39880 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC0.2□□□□□ -2.38
CUX1P39880 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.2□□□□□ -2.38
CUX1P39880 AC009509.4-201ENST00000619202 509 ntBASIC0.2□□□□□ -2.38
CUX1P39880 RNU6-152P-201ENST00000384037 107 ntBASIC0.19□□□□□ -2.38
CUX1P39880 MIR604-201ENST00000384880 94 ntBASIC0.19□□□□□ -2.38
CUX1P39880 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.19□□□□□ -2.38
CUX1P39880 SKA2P1-201ENST00000425592 390 ntBASIC0.19□□□□□ -2.38
CUX1P39880 COX7A2P2-201ENST00000505291 250 ntBASIC0.19□□□□□ -2.38
CUX1P39880 AC074344.1-201ENST00000512823 224 ntBASIC0.19□□□□□ -2.38
CUX1P39880 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.19□□□□□ -2.38
CUX1P39880 MIR4723-201ENST00000585070 81 ntBASIC0.19□□□□□ -2.38
CUX1P39880 AC068790.6-201ENST00000602558 258 ntBASIC0.19□□□□□ -2.38
CUX1P39880 Z82243.1-201ENST00000609432 473 ntBASIC0.19□□□□□ -2.38
CUX1P39880 AC104465.1-201ENST00000611365 139 ntBASIC0.19□□□□□ -2.38
CUX1P39880 AC011939.3-201ENST00000613686 466 ntBASIC0.19□□□□□ -2.38
CUX1P39880 AC107075.1-201ENST00000613695 314 ntBASIC0.19□□□□□ -2.38
CUX1P39880 AL121978.1-201ENST00000402778 359 ntBASIC0.18□□□□□ -2.38
CUX1P39880 RNU2-33P-201ENST00000410344 192 ntBASIC0.18□□□□□ -2.38
CUX1P39880 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
CUX1P39880 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC0.18□□□□□ -2.38
CUX1P39880 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC0.18□□□□□ -2.38
CUX1P39880 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC0.18□□□□□ -2.38
CUX1P39880 ARL2BPP5-201ENST00000523141 481 ntBASIC0.18□□□□□ -2.38
CUX1P39880 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC0.18□□□□□ -2.38
CUX1P39880 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.18□□□□□ -2.38
CUX1P39880 AC040896.1-201ENST00000613819 479 ntBASIC0.18□□□□□ -2.38
CUX1P39880 AL132822.1-201ENST00000617063 513 ntBASIC0.18□□□□□ -2.38
CUX1P39880 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
CUX1P39880 Y_RNA.610-201ENST00000410681 103 ntBASIC0.18□□□□□ -2.38
CUX1P39880 RNU2-7P-201ENST00000410794 178 ntBASIC0.18□□□□□ -2.38
CUX1P39880 SNX2P2-201ENST00000424553 323 ntBASIC0.18□□□□□ -2.38
CUX1P39880 UBE2V1P8-201ENST00000437166 265 ntBASIC0.18□□□□□ -2.38
CUX1P39880 PTGES3P1-201ENST00000439531 483 ntBASIC0.18□□□□□ -2.38
CUX1P39880 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC0.18□□□□□ -2.38
CUX1P39880 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC0.18□□□□□ -2.38
CUX1P39880 OR2AQ1P-201ENST00000451972 200 ntBASIC0.18□□□□□ -2.38
CUX1P39880 RNU6-586P-201ENST00000517265 104 ntBASIC0.18□□□□□ -2.38
CUX1P39880 AC109329.1-201ENST00000518744 317 ntBASIC0.18□□□□□ -2.38
CUX1P39880 AC079598.5-201ENST00000547460 117 ntBASIC0.18□□□□□ -2.38
CUX1P39880 AP003465.2-201ENST00000602571 373 ntBASIC0.18□□□□□ -2.38
CUX1P39880 MIR6134-201ENST00000617606 109 ntBASIC0.18□□□□□ -2.38
CUX1P39880 AC092608.3-201ENST00000625017 386 ntBASIC0.18□□□□□ -2.38
CUX1P39880 MTND4P14-201ENST00000435799 1354 ntBASIC0.17□□□□□ -2.38
CUX1P39880 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.17□□□□□ -2.38
CUX1P39880 Y_RNA.48-201ENST00000362710 103 ntBASIC0.17□□□□□ -2.38
CUX1P39880 Y_RNA.255-201ENST00000364581 97 ntBASIC0.17□□□□□ -2.38
CUX1P39880 Y_RNA.552-201ENST00000384665 112 ntBASIC0.17□□□□□ -2.38
CUX1P39880 C8orf59P1-201ENST00000429930 303 ntBASIC0.17□□□□□ -2.38
CUX1P39880 RPL36AP53-201ENST00000432891 316 ntBASIC0.17□□□□□ -2.38
CUX1P39880 TIMM9P1-201ENST00000436122 256 ntBASIC0.17□□□□□ -2.38
CUX1P39880 RPS15AP9-201ENST00000439856 381 ntBASIC0.17□□□□□ -2.38
CUX1P39880 MTCO3P2-201ENST00000457365 171 ntBASIC0.17□□□□□ -2.38
CUX1P39880 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.17□□□□□ -2.38
CUX1P39880 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.17□□□□□ -2.38
CUX1P39880 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.17□□□□□ -2.38
CUX1P39880 TRAV32-201ENST00000553993 340 ntBASIC0.17□□□□□ -2.38
CUX1P39880 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.17□□□□□ -2.38
CUX1P39880 Z83818.1-201ENST00000603584 150 ntBASIC0.17□□□□□ -2.38
CUX1P39880 AL583856.2-201ENST00000606298 543 ntBASIC0.17□□□□□ -2.38
CUX1P39880 AC011374.2-201ENST00000607135 526 ntBASIC0.17□□□□□ -2.38
CUX1P39880 AC239868.4-201ENST00000608318 671 ntBASIC0.17□□□□□ -2.38
CUX1P39880 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.17□□□□□ -2.38
CUX1P39880 AC079416.3-201ENST00000624479 549 ntBASIC0.17□□□□□ -2.38
CUX1P39880 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.16□□□□□ -2.38
CUX1P39880 RNA5SP266-201ENST00000410273 108 ntBASIC0.16□□□□□ -2.38
CUX1P39880 MTCYBP38-201ENST00000417160 1123 ntBASIC0.16□□□□□ -2.38
CUX1P39880 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC0.16□□□□□ -2.38
CUX1P39880 SNRPEP9-201ENST00000436794 238 ntBASIC0.16□□□□□ -2.38
CUX1P39880 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC0.16□□□□□ -2.38
CUX1P39880 AC136619.2-201ENST00000563361 631 ntBASIC0.16□□□□□ -2.38
CUX1P39880 AC009237.15-201ENST00000610252 501 ntBASIC0.16□□□□□ -2.38
CUX1P39880 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.16□□□□□ -2.38
CUX1P39880 FARSBP1-201ENST00000435808 1778 ntBASIC0.16□□□□□ -2.38
CUX1P39880 RNU6-112P-201ENST00000363599 104 ntBASIC0.15□□□□□ -2.39
CUX1P39880 RPS3AP1-201ENST00000413190 320 ntBASIC0.15□□□□□ -2.39
CUX1P39880 RPL31P54-201ENST00000429803 370 ntBASIC0.15□□□□□ -2.39
CUX1P39880 HSPE1P9-201ENST00000440046 311 ntBASIC0.15□□□□□ -2.39
CUX1P39880 RNA5SP269-201ENST00000459032 137 ntBASIC0.15□□□□□ -2.39
CUX1P39880 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.15□□□□□ -2.39
CUX1P39880 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.15□□□□□ -2.39
CUX1P39880 SNORA3.4-201ENST00000515969 96 ntBASIC0.15□□□□□ -2.39
CUX1P39880 RNU5B-3P-201ENST00000516601 115 ntBASIC0.15□□□□□ -2.39
CUX1P39880 AP000763.2-201ENST00000540641 163 ntBASIC0.15□□□□□ -2.39
CUX1P39880 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC0.15□□□□□ -2.39
CUX1P39880 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.15□□□□□ -2.39
CUX1P39880 MIR3664-201ENST00000579074 99 ntBASIC0.15□□□□□ -2.39
CUX1P39880 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC0.15□□□□□ -2.39
CUX1P39880 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC0.15□□□□□ -2.39
CUX1P39880 AC004805.2-201ENST00000605382 482 ntBASIC0.15□□□□□ -2.39
CUX1P39880 AC112220.2-201ENST00000605513 533 ntBASIC0.15□□□□□ -2.39
CUX1P39880 AP005212.4-201ENST00000614206 710 ntBASIC0.15□□□□□ -2.39
CUX1P39880 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC0.15□□□□□ -2.39
CUX1P39880 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.14□□□□□ -2.39
CUX1P39880 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
CUX1P39880 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
CUX1P39880 SNORD114-31-201ENST00000363219 75 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 180.1 ms