Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AL030996.1-201ENST00000411430 235 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 RPL32P35-201ENST00000415214 394 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 RPS15AP6-201ENST00000420703 385 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXD9P28356 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXD9P28356 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXD9P28356 AC011816.1-201ENST00000441346 546 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 PCMTD1P1-201ENST00000455560 355 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 RNU7-170P-201ENST00000459303 61 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 RN7SL20P-201ENST00000488827 297 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXD9P28356 AC022493.2-201ENST00000506122 481 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 RNU6-764P-201ENST00000516396 105 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 RN7SKP272-201ENST00000516988 232 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.11□□□□□ -1.91
HOXD9P28356 SUB1P3-201ENST00000564581 315 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 AC010653.1-201ENST00000571108 881 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 MIR3609-201ENST00000582661 80 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXD9P28356 AC006157.1-201ENST00000611750 366 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXD9P28356 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXD9P28356 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXD9P28356 FAM35BP-202ENST00000497389 3337 ntBASIC3.11□□□□□ -1.91
HOXD9P28356 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXD9P28356 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXD9P28356 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXD9P28356 U3.6-201ENST00000363622 211 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 Y_RNA.245-201ENST00000364493 95 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 RNU6-384P-201ENST00000364900 104 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 Y_RNA.428-201ENST00000384078 102 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 RNU6-196P-201ENST00000384315 107 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 MIR568-201ENST00000385036 95 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 MIR325-201ENST00000385260 98 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 RNU2-33P-201ENST00000410344 192 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 AL592148.1-201ENST00000413568 445 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 AL133396.1-201ENST00000432048 687 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXD9P28356 DAP3P1-201ENST00000441522 278 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD9P28356 GSTA11P-201ENST00000452866 669 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 BTF3P15-201ENST00000455606 336 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD9P28356 RPS29P26-201ENST00000477483 171 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXD9P28356 AC015911.1-201ENST00000495111 156 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 AC097462.2-201ENST00000504623 481 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 Y_RNA.661-201ENST00000516003 99 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 SNORD116.3-201ENST00000517176 78 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 AC104576.1-201ENST00000524225 88 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 GNAI2P1-201ENST00000541815 315 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 CPDP1-201ENST00000579660 283 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 AP000787.2-201ENST00000604432 568 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 AL033523.1-201ENST00000605153 153 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 AC010205.1-201ENST00000616668 449 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXD9P28356 AC006386.2-201ENST00000624491 75 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 AC012005.1-201ENST00000624575 75 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXD9P28356 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXD9P28356 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXD9P28356 AC000403.1-201ENST00000613696 3585 ntBASIC3.1□□□□□ -1.91
HOXD9P28356 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD9P28356 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD9P28356 AL359693.1-201ENST00000614959 2407 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD9P28356 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD9P28356 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD9P28356 RNA5SP293-201ENST00000410527 113 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD9P28356 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD9P28356 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD9P28356 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD9P28356 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXD9P28356 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD9P28356 MTCYBP9-201ENST00000431021 303 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 AL139132.1-201ENST00000431587 344 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD9P28356 RPL12P25-201ENST00000455592 494 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 AP001486.1-201ENST00000463339 476 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 AC008571.1-201ENST00000467232 300 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 AL049873.1-201ENST00000480540 376 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXD9P28356 MTCO2P24-201ENST00000515611 426 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 RNU6-475P-201ENST00000516073 104 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 RNU6-264P-201ENST00000517134 104 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXD9P28356 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD9P28356 LARP7P3-201ENST00000579888 337 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
HOXD9P28356 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXD9P28356 AC087588.2-201ENST00000617667 426 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 AL162373.1-201ENST00000620433 407 ntBASIC3.09□□□□□ -1.91
HOXD9P28356 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXD9P28356 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
HOXD9P28356 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.92
HOXD9P28356 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
HOXD9P28356 AC007785.2-201ENST00000598627 1916 ntBASIC3.09□□□□□ -1.92
HOXD9P28356 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms