Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 OR4K8P-201ENST00000578842 1048 ntBASIC1.56□□□□□ -2.16
COL5A1P20908 MIR3618-201ENST00000580330 88 ntBASIC1.56□□□□□ -2.16
COL5A1P20908 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.56□□□□□ -2.16
COL5A1P20908 AC012669.1-201ENST00000603209 283 ntBASIC1.56□□□□□ -2.16
COL5A1P20908 AL391646.1-201ENST00000603860 190 ntBASIC1.56□□□□□ -2.16
COL5A1P20908 AC092954.2-201ENST00000609103 430 ntBASIC1.56□□□□□ -2.16
COL5A1P20908 AC090517.2-201ENST00000614966 680 ntBASIC1.56□□□□□ -2.16
COL5A1P20908 AL157834.3-201ENST00000615543 103 ntBASIC1.56□□□□□ -2.16
COL5A1P20908 AC005609.4-201ENST00000625071 447 ntBASIC1.56□□□□□ -2.16
COL5A1P20908 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL5A1P20908 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL5A1P20908 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
COL5A1P20908 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
COL5A1P20908 Y_RNA.38-201ENST00000362617 102 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 Y_RNA.255-201ENST00000364581 97 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 SNORA67.1-201ENST00000364749 141 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 Y_RNA.381-201ENST00000365666 102 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 RNU6-1181P-201ENST00000384191 106 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 CCNG1P1-201ENST00000406783 885 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.55□□□□□ -2.16
COL5A1P20908 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.55□□□□□ -2.16
COL5A1P20908 MTATP6P18-201ENST00000417994 673 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 TRAPPC2P4-201ENST00000421750 331 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 HMGN2P38-201ENST00000423806 265 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 MTCO1P20-201ENST00000425366 358 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 AC119618.1-201ENST00000434191 222 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC1.55□□□□□ -2.16
COL5A1P20908 MTCO3P18-201ENST00000440206 761 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.55□□□□□ -2.16
COL5A1P20908 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 HMGN1P7-201ENST00000491722 313 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
COL5A1P20908 RNU7-51P-201ENST00000516560 62 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 RNU6-430P-201ENST00000517078 107 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.55□□□□□ -2.16
COL5A1P20908 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.55□□□□□ -2.16
COL5A1P20908 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.55□□□□□ -2.16
COL5A1P20908 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.55□□□□□ -2.16
COL5A1P20908 AC105224.1-201ENST00000587055 421 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 AL360085.1-201ENST00000604713 532 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 AL136363.1-201ENST00000605349 337 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 MIR98-201ENST00000606724 119 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.55□□□□□ -2.16
COL5A1P20908 AC130324.3-201ENST00000614165 542 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.55□□□□□ -2.16
COL5A1P20908 AC011155.2-201ENST00000623202 216 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 AL136313.1-201ENST00000624804 202 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 AC110079.1-202ENST00000635213 138 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 MIR3662-201ENST00000637030 95 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 MIR1321-201ENST00000637766 79 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 AC135776.4-201ENST00000624300 1904 ntBASIC1.55□□□□□ -2.16
COL5A1P20908 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.55□□□□□ -2.16
COL5A1P20908 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC1.55□□□□□ -2.16
COL5A1P20908 RNU6-60P-201ENST00000364792 103 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 RNU4-12P-201ENST00000365233 139 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
COL5A1P20908 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.54□□□□□ -2.16
COL5A1P20908 RNU6-780P-201ENST00000391030 104 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.54□□□□□ -2.16
COL5A1P20908 RPL31P35-201ENST00000431058 377 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
COL5A1P20908 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.54□□□□□ -2.16
COL5A1P20908 SNRPGP6-201ENST00000451124 220 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.54□□□□□ -2.16
COL5A1P20908 AL031183.1-201ENST00000457667 207 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AC013267.1-201ENST00000458227 267 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.54□□□□□ -2.16
COL5A1P20908 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.54□□□□□ -2.16
COL5A1P20908 SNORA31.22-201ENST00000517204 135 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.54□□□□□ -2.16
COL5A1P20908 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.54□□□□□ -2.16
COL5A1P20908 AC022616.3-201ENST00000523940 148 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 MIR3921-201ENST00000577308 85 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.54□□□□□ -2.16
COL5A1P20908 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.54□□□□□ -2.16
COL5A1P20908 AC174048.1-201ENST00000603389 144 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AC025449.1-201ENST00000603896 529 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AF250324.2-201ENST00000608299 610 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.54□□□□□ -2.16
COL5A1P20908 AL590282.1-201ENST00000610379 1136 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
COL5A1P20908 U6.42-201ENST00000618440 107 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AL603758.1-201ENST00000618654 241 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.54□□□□□ -2.16
COL5A1P20908 MIR203B-201ENST00000636080 86 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.54□□□□□ -2.16
COL5A1P20908 OR4G2P-201ENST00000328113 903 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 RNU6-1085P-201ENST00000363576 107 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 RNY4P14-201ENST00000363656 96 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 RNU6-867P-201ENST00000364956 107 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 RNU6-61P-201ENST00000365528 109 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 RNY3P14-201ENST00000384309 102 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 MIR627-201ENST00000384979 97 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 RNU6-332P-201ENST00000391193 108 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AC068050.1-201ENST00000394891 380 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 RNU2-9P-201ENST00000410194 145 ntBASIC1.54□□□□□ -2.16
COL5A1P20908 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC1.54□□□□□ -2.16
COL5A1P20908 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.54□□□□□ -2.16
COL5A1P20908 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC1.54□□□□□ -2.16
COL5A1P20908 RPS15AP9-201ENST00000439856 381 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms